Evidence map›Paper›PMID 29281706›Full record

ArticlePloS one2017

A genome-wide study to identify genes responsible for oviduct development in chickens.

Manman Shen, Liang Qu, Meng Ma, Taocun Dou, Jian Lu, Jun Guo, Yuping Hu, Xingguo Wang, Yongfeng Li, Kehua Wang and 1 more

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Manman ShenJiangsu Institute of Poultry Science, Chinese Academy of Agricultural Science, Yangzhou, China.
Liang QuJiangsu Institute of Poultry Science, Chinese Academy of Agricultural Science, Yangzhou, China.
Meng MaJiangsu Institute of Poultry Science, Chinese Academy of Agricultural Science, Yangzhou, China.
Taocun DouJiangsu Institute of Poultry Science, Chinese Academy of Agricultural Science, Yangzhou, China.
Jian LuJiangsu Institute of Poultry Science, Chinese Academy of Agricultural Science, Yangzhou, China.
Jun GuoJiangsu Institute of Poultry Science, Chinese Academy of Agricultural Science, Yangzhou, China.
Yuping HuJiangsu Institute of Poultry Science, Chinese Academy of Agricultural Science, Yangzhou, China.
Xingguo WangJiangsu Institute of Poultry Science, Chinese Academy of Agricultural Science, Yangzhou, China.
Yongfeng LiJiangsu Institute of Poultry Science, Chinese Academy of Agricultural Science, Yangzhou, China.
Kehua WangJiangsu Institute of Poultry Science, Chinese Academy of Agricultural Science, Yangzhou, China.ORCID 0000-0003-4125-1204
Ning YangCollege of Animal Science and Technology, China Agricultural University, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular genetic tools provide a method for improving the breeding selection of chickens (Gallus gallus). Although some studies have identified genes affecting egg quality, little is known about the genes responsible for oviduct development. To address this issue, here we used a genome-wide association (GWA) study to detect genes or genomic regions that are related to oviduct development in a chicken F2 resource population by employing high-density 600 K single-nucleotide polymorphism (SNP) arrays. For oviduct length and weight, which exhibited moderate heritability estimates of 0.35 and 0.39, respectively, chromosome 1 (GGA1) explained 9.45% of the genetic variance, while GGA4 to GGA8 and GGA11 explained over 1% of the variance. Independent univariate genome-wide screens for oviduct length and weight detected 69 significant SNPs on GGA1 and 49 suggestive SNPs on GGA1, GGA4, and GGA8. One hundred and fourteen suggestive SNPs were associated with oviduct length, while 73 SNPs were associated with oviduct weight. The significant genomic regions affecting oviduct weight ranged from 167.79-174.29 Mb on GGA1, 73.16-75.70 Mb on GGA4, and 4.88-4.92 Mb on GGA8. The genes CKAP2, CCKAR, NCAPG, IGFBP3, and GORAB were shown to have potential roles in oviduct development. These genes are involved in cell survival, appetite, and growth control. Our results represent the first GWA analysis of genes controlling oviduct weight and length. The identification of genomic loci and potential candidate genes affecting oviduct development greatly increase our understanding of the genetic basis underlying oviduct development, which could have an impact on the selection of egg quality.

Indexed as

Genome-Wide Association StudyAnimalsChickensFemaleGenetic VariationLinkage DisequilibriumOviductsPolymorphism, Single Nucleotide

Identifiers

PMID29281706
PMCPMC5744973

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.