Evidence map›Paper›PMID 29281639›Full record

ArticlePLoS neglected tropical diseases2017

Isolation and sequencing of Dashli virus, a novel Sicilian-like virus in sandflies from Iran; genetic and phylogenetic evidence for the creation of one novel species within the Phlebovirus genus in the Phenuiviridae family.

Cigdem Alkan, Vahideh Moin Vaziri, Nazli Ayhan, Mehdi Badakhshan, Laurence Bichaud, Nourina Rahbarian, Ezat-Aldin Javadian, Bulent Alten, Xavier de Lamballerie, Remi N Charrel

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Cigdem AlkanUMR "Unité des Virus Emergents" (UVE Aix-Marseille Univ-IRD 190-Inserm 1207-EHESP), Marseille, France.
Vahideh Moin VaziriDepartment of Parasitology and Mycology, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Nazli AyhanUMR "Unité des Virus Emergents" (UVE Aix-Marseille Univ-IRD 190-Inserm 1207-EHESP), Marseille, France.
Mehdi BadakhshanDepartment of Medical Entomology and Vector Control, School of Public Health and Institute of Public Health Research, Tehran University of Medical Sciences, Tehran, Iran.
Laurence BichaudUMR "Unité des Virus Emergents" (UVE Aix-Marseille Univ-IRD 190-Inserm 1207-EHESP), Marseille, France.
Nourina RahbarianDepartment of Parasitology and Mycology, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Ezat-Aldin JavadianDepartment of Medical Entomology and Vector Control, School of Public Health and Institute of Public Health Research, Tehran University of Medical Sciences, Tehran, Iran.
Bulent AltenFaculty of Science, Department of Biology, Ecology Section, ESR Laboratories, Hacettepe University, Ankara, Turkey.
Xavier de LamballerieUMR "Unité des Virus Emergents" (UVE Aix-Marseille Univ-IRD 190-Inserm 1207-EHESP), Marseille, France.
Remi N CharrelUMR "Unité des Virus Emergents" (UVE Aix-Marseille Univ-IRD 190-Inserm 1207-EHESP), Marseille, France.ORCID 0000-0002-7675-8251
Inserm · FRShahid Beheshti University of Medical Sciences · IRTehran University of Medical Sciences · IRHacettepe University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phlebotomine sandflies are vectors of phleboviruses that cause sandfly fever or meningitis with significant implications for public health. Although several strains of these viruses had been isolated in Iran in the late 1970's, there was no recent data about the present situation at the outset of this study. Entomological investigations performed in 2009 and 2011 in Iran collected 4,770 sandflies from 10 different regions. Based on morphological identification, they were sorted into 315 pools according to species, sex, trapping station and date of capture. A phlebovirus, provisionally named Dashli virus (DASHV), was isolated from one pool of Sergentomyia spp, and subsequently DASHV RNA was detected in a second pool of Phlebotomus papatasi. Genetic and phylogenetic analyses based on complete coding genomic sequences indicated that (i) DASHV is most closely related to the Iranian isolates of Sandfly fever Sicilian virus [SFSV], (ii) there is a common ancestor to DASHV, Sandfly fever Sicilian- (SFS) and SFS-like viruses isolated in Italy, India, Turkey, and Cyprus (lineage I), (iii) DASHV is more distantly related with Corfou and Toros viruses (lineage II) although common ancestry is supported with 100% bootstrap, (iii) lineage I can be subdivided into sublineage Ia including all SFSV, SFCV and SFTV except those isolated in Iran which forms sublineage Ib (DASHV). Accordingly, we suggest to approve Sandfly fever Sicilian virus species consisting of the all aforementioned viruses. Owing that most of these viruses have been identified in human patients with febrile illness, DASHV should be considered as a potential human pathogen in Iran.

Indexed as

PhlebovirusAnimalsBase SequenceFemaleGenome, ViralHumansInsect VectorsIranMalePhlebotomus FeverPhylogenyPsychodidaeRNA, ViralSequence Analysis, RNARNA, Viral

Identifiers

PMID29281639
PMCPMC5760094
OpenAlexW2777936017

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.