Evidence map›Paper›PMID 29280296›Full record

ArticleProtein science : a publication of the Protein Society2018

Lock and chop: A novel method for the generation of a PICK1 PDZ domain and piperidine-based inhibitor co-crystal structure.

Douglas J Marcotte, Jean-Christophe Hus, Charles C Banos, Craig Wildes, Robert Arduini, Chris Bergeron, Catherine A Hession, Darren P Baker, Edward Lin, Kevin M Guckian and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. PDZ Domains as Drug Targets.Advanced therapeutics · 2019
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Douglas J MarcotteBiotherapeutics and Medicinal Sciences, Biogen Inc, Cambridge, Massachusetts.
Jean-Christophe HusBiotherapeutics and Medicinal Sciences, Biogen Inc, Cambridge, Massachusetts.
Charles C BanosNeurodegeneration and Repair, Biogen Inc, Cambridge, Massachusetts.
Craig WildesBiotherapeutics and Medicinal Sciences, Biogen Inc, Cambridge, Massachusetts.
Robert ArduiniBiotherapeutics and Medicinal Sciences, Biogen Inc, Cambridge, Massachusetts.
Chris BergeronBiotherapeutics and Medicinal Sciences, Biogen Inc, Cambridge, Massachusetts.
Catherine A HessionBiotherapeutics and Medicinal Sciences, Biogen Inc, Cambridge, Massachusetts.
Darren P BakerBiotherapeutics and Medicinal Sciences, Biogen Inc, Cambridge, Massachusetts.
Edward LinBiotherapeutics and Medicinal Sciences, Biogen Inc, Cambridge, Massachusetts.
Kevin M GuckianBiotherapeutics and Medicinal Sciences, Biogen Inc, Cambridge, Massachusetts.
Anthone W DunahNeurodegeneration and Repair, Biogen Inc, Cambridge, Massachusetts.
Laura F SilvianBiotherapeutics and Medicinal Sciences, Biogen Inc, Cambridge, Massachusetts.
Biogen (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The membrane protein interacting with kinase C1 (PICK1) plays a trafficking role in the internalization of neuron receptors such as the amino-3-hydroxyl-5-methyl-4-isoxazole-propionate (AMPA) receptor. Reduction of surface AMPA type receptors on neurons reduces synaptic communication leading to cognitive impairment in progressive neurodegenerative diseases such as Alzheimer disease. The internalization of AMPA receptors is mediated by the PDZ domain of PICK1 which binds to the GluA2 subunit of AMPA receptors and targets the receptor for internalization through endocytosis, reducing synaptic communication. We planned to block the PICK1-GluA2 protein-protein interaction with a small molecule inhibitor to stabilize surface AMPA receptors as a therapeutic possibility for neurodegenerative diseases. Using a fluorescence polarization assay, we identified compound BIO124 as a modest inhibitor of the PICK1-GluA2 interaction. We further tried to improve the binding affinity of BIO124 using structure-aided drug design but were unsuccessful in producing a co-crystal structure using previously reported crystallography methods for PICK1. Here, we present a novel method through which we generated a co-crystal structure of the PDZ domain of PICK1 bound to BIO124.

Indexed as

Binding SitesCarrier ProteinsCrystallographyDrug DesignHumansModels, MolecularMolecular ConformationNuclear ProteinsPDZ DomainsProtein BindingReceptors, AMPASmall Molecule LibrariesStructure-Activity RelationshipCarrier Proteinsglutamate receptor ionotropic, AMPA 2Nuclear ProteinsPICk1 protein, humanReceptors, AMPASmall Molecule Librariesclass II PDZ binding motifPDZ domain inhibitor cocrystallizationPDZ domain small molecule inhibitorsPICK1 PDZ domain crystal structureproteolysis

Identifiers

PMID29280296
PMCPMC5818740
OpenAlexW2790884236

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.