Evidence map›Paper›PMID 29279609›Full record

ArticleJournal of human genetics2018

Molecular characterization of HDAC8 deletions in individuals with atypical Cornelia de Lange syndrome.

Maria Helgeson, Jennifer Keller-Ramey, Amy Knight Johnson, Jennifer A Lee, Daniel B Magner, Brett Deml, Jacea Deml, Ying-Ying Hu, Zejuan Li, Kirsten Donato and 9 more

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In one paragraph

Article in Journal of human genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 1 country.

Maria HelgesonDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Jennifer Keller-RameyDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Amy Knight JohnsonDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Jennifer A LeeGreenwood Genetic Center, Greenwood, SC, USA.
Daniel B MagnerIAM Scientific, Inc, Greenville, SC, USA.
Brett DemlDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Jacea DemlDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Ying-Ying HuDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Zejuan LiDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Kirsten DonatoDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Soma DasDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Rachel LaframboiseCHU de Quebec, CHUL, Quebec, QC, Canada.
Sandra TremblayCHU de Quebec, CHUL, Quebec, QC, Canada.
Ian KrantzDivision of Human Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Sarah NoonDivision of Human Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
George HogansonUniversity of Illinois College of Medicine, Peoria, IL, USA.
Jennifer BurtonUniversity of Illinois College of Medicine, Peoria, IL, USA.
Christian P SchaafDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-2148-7490
Daniela Del GaudioDepartment of Human Genetics, University of Chicago, Chicago, IL, USA. ddelgaudio@bsd.uchicago.edu.
University of Chicago · USChildren's Hospital of Philadelphia · USIllinois College · USBaylor College of Medicine · USGreenwood Genetic Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cornelia de Lange syndrome (CdLS) is a rare neurodevelopmental syndrome for which mutations in five causative genes that encode (SMC1A, SMC3, RAD21) or regulate (NIPBL, HDAC8) the cohesin complex, account for ~70% of cases. Herein we report on four female Subjects who were found to carry novel intragenic deletions in HDAC8. In one case, the deletion was found in mosaic state and it was determined to be present in ~38% of blood lymphocytes and in nearly all cells of a buccal sample. All deletions, for which parental blood samples were available, were shown to have arisen de novo. X-chromosome inactivation studies demonstrated marked skewing, suggesting strong selection against the mutated HDAC8 allele. Based on an investigation of the deletion breakpoints, we hypothesize that microhomology-mediated replicative mechanisms may be implicated in the formation of some of these rearrangements. This study broadens the mutational spectrum of HDAC8, provides the first description of a causative HDAC8 somatic mutation and increases the knowledge on possible mutational mechanisms underlying copy number variations in HDAC8. Moreover our findings highlight the clinical utility of considering copy number analysis in HDAC8 as well as the analysis on DNA from more than one tissue as an indispensable part of the routine molecular diagnosis of individuals with CdLS or CdLS-overlapping features.

Indexed as

Genetic Association StudiesPhenotypeSequence DeletionBase SequenceChildChild, PreschoolChromosome BreakpointsComparative Genomic HybridizationDe Lange SyndromeDNA Copy Number VariationsExonsFaciesFemaleGene DuplicationHistone DeacetylasesHumansHDAC8 protein, humanHistone DeacetylasesRepressor Proteins

Identifiers

PMID29279609
OpenAlexW2777446054

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.