Evidence map›Paper›PMID 29278617›Full record

SynthesisPharmacogenetics and genomics2018

Genome-wide meta-analyses identifies novel taxane-induced peripheral neuropathy-associated loci.

Lara E Sucheston-Campbell, Alyssa I Clay-Gilmour, William E Barlow, G Thomas Budd, Daniel O Stram, Christopher A Haiman, Xin Sheng, Li Yan, Gary Zirpoli, Song Yao and 16 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Pharmacogenetics and genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 2 pooled it
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 2 syntheses or guidelines pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Evolution of predictive risk factor analysis for chemotherapy-related toxicity.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2023
    Review
  10. Article
  11. Chemotherapy-Induced Peripheral Neuropathy.Handbook of experimental pharmacology · 2023
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Observational
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 19 institutions in 2 countries.

Lara E Sucheston-CampbellThe Ohio State University, Columbus.
Alyssa I Clay-GilmourMayo Clinic, Rochester, Minnesota.
William E BarlowSWOG Statistical Center.
G Thomas BuddCleveland Clinic, Cleveland, Ohio.
Daniel O StramUniversity of Southern California, Los Angeles.
Christopher A HaimanUniversity of Southern California, Los Angeles.
Xin ShengUniversity of Southern California, Los Angeles.
Li YanRoswell Park Cancer Institute, Buffalo.
Gary ZirpoliRoswell Park Cancer Institute, Buffalo.
Song YaoRoswell Park Cancer Institute, Buffalo.
Chen JiangAlliance Statistics and Data Center, Duke University Medical Center.
Kouros OwzarAlliance Statistics and Data Center, Duke University Medical Center.
Dawn HershmanColumbia University, New York, New York.
Kathy S AlbainLoyola University Chicago Cardinal Bernardin Cancer Center, Maywood, Illinois.
Daniel F HayesUniversity of Michigan, Ann Arbor, Michigan.
Halle C MooreCleveland Clinic, Cleveland, Ohio.
Timothy J HobdayMayo Clinic, Rochester, Minnesota.
James A StewartBaystate Medical Center, Springfield, Massachusetts.
Abbas RizviThe Ohio State University, Columbus.
Claudine IsaacsGeorgetown University, Washington, District of Columbia.
Muhammad SalimAllan Blair Cancer Centre, Regina, Saskatchewan, Canada.
Jule R GralowSeattle Cancer Care Alliance, Seattle.
Gabriel N HortobagyiMD Anderson Cancer Center, Houston, Texas.
Robert B LivingstonArizona Cancer Center, Tucson, Arizona, USA.
Deanna L KroetzUniversity of California San Francisco, San Francisco, California.
Christine B AmbrosoneRoswell Park Cancer Institute, Buffalo.
Roswell Park Comprehensive Cancer Center · USUniversity of Southern California · USCleveland Clinic · USMayo Clinic · USArizona Oncology · USBaystate Medical Center · USColumbia University · USDuke Medical Center · USDuke University · USGeorgetown University · USGTx (United States) · USLoyola University Chicago · USSaskatchewan Cancer Agency · CASeattle Cancer Care Alliance · USSWOG Cancer Research Network · USThe Ohio State University · USThe University of Texas MD Anderson Cancer Center · USUniversity of California, San Francisco · USUniversity of Michigan–Ann Arbor · US

Funding

Member Site CoreU10CA180821 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI Evanthia Galanis · 2014 to 2026
$177.3M
SWOG Network Group Operations Center of the NCTNU10CA180888 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI PRIMO N. LARA · 2014 to 2026
$152.1M
SWOG Statistics & Data Management Center complex - extension supplement for GY06U10CA180819 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Michael L. LeBlanc · 2014 to 2026
$115.2M
SWOG NCORP Research BaseUG1CA189974 · NCI · THE HOPE FOUNDATION · PI CHARLES D. BLANKE, DAWN HERSHMAN · 2014 to 2026
$80.6M
Tumor Banking for the Southwest Oncology GroupU24CA114748 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BLANKE, CHARLES D. · 2005 to 2013
$10.3M
Mayo Cancer Genetic Epidemiology Training ProgramR25CA092049 · NCI · MAYO CLINIC ROCHESTER · PI PETERSEN, GLORIA M., VACHON, CELINE M · 2001 to 2018
$5.3M
UM LAPs- U10 GrantU10CA180801 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ZALUPSKI, MARK M · 2014 to 2018
$3.7M
Network Lead Academic Participating Site Grant from the Roswell Cancer Inst.U10CA180866 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI ERNSTOFF, MARC S, LELE, SHASHIKANT · 2014 to 2018
$2.9M
Pharmacogenetics: Breast Cancer Treatment and PrognosisR01CA095222 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI AMBROSONE, CHRISTINE B. · 2003 to 2005
$1.1M
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
NCI NIH HHS R01 CA095222NCI NIH HHS R25 CA092049NCI NIH HHS U10 CA180801NCI NIH HHS U10 CA180819NCI NIH HHS U10 CA180821NCI NIH HHS U10 CA180866NCI NIH HHS U10 CA180888NCI NIH HHS U24 CA114748NCI NIH HHS UG1 CA189974NIH HHS S10 OD018164
6 · The paper itself

Abstract

objectiveTaxane containing chemotherapy extends survival for breast cancer patients. However, taxane-induced peripheral neuropathy (TIPN) cannot be predicted, prevented or effectively treated. Using genome-wide analyses, we sought to identify common risk variants for TIPN. PATIENTS AND

methodsWomen with high-risk breast cancer enrolled in SWOG 0221 were genotyped using the Illumina 1M chip. Genome-wide analyses were performed in relation to ≥grade 3 Common Terminology Criteria for Adverse Events (CTCAE) neuropathy in European and African Americans. Data were meta-analyzed with GW associations of CTCAE ≥grade 3 versus <grade 3 in CALGB 40101 assuming a fixed effects model.

resultsThe percentage of ≥grade 3 TIPN in 1269 European Americans and 139 African Americans in S0221, was 11.6 and 22.3%, respectively. CALGB 40101 ≥grade 3 TOPN was 7.2%. The most significant association with ≥grade 3 TIPN was the G allele of rs1858826 in GNGT1 (Pmeta=1.1×10), which showed a decrease in risk of ≥grade 3 TIPN (odds ratio=0.29, 95% confidence interval: 0.18-0.46).

conclusionThe genetic variants associated with ≥grade 3 TIPN are hypothesized to have biochemical functions and reside in and near genes involved in diabetes and diabetic neuropathy. This finding is consistent with results from CALGB 40101 pathway analyses. Larger homogeneous trials with similar dosing and criteria for defining neuropathy are needed to properly assess the relationship of genomics with the neuropathy spectrum.

Indexed as

Genetic Predisposition to DiseaseBlack or African AmericanBreast NeoplasmsBridged-Ring CompoundsFemaleGenome-Wide Association StudyGenomicsGenotypeHumansPeripheral Nervous System DiseasesPolymorphism, Single NucleotideTaxoidsWhite PeopleBridged-Ring CompoundstaxaneTaxoids

Identifiers

PMID29278617
PMCPMC5824720
OpenAlexW2779612734

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.