Evidence map›Paper›PMID 29278391›Full record

ArticleInternational journal of molecular sciences2017

Using MOEA with Redistribution and Consensus Branches to Infer Phylogenies.

Xiaoping Min, Mouzhao Zhang, Sisi Yuan, Shengxiang Ge, Xiangrong Liu, Xiangxiang Zeng, Ningshao Xia

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaoping MinSchool of Information Science and Technology, Xiamen University, Xiamen 361102, China. mxp@xmu.edu.cn.
Mouzhao ZhangSchool of Information Science and Technology, Xiamen University, Xiamen 361102, China. zhangmouzhao@stu.xmu.edu.cn.
Sisi YuanSchool of Information Science and Technology, Xiamen University, Xiamen 361102, China. sisiyuan.xmu@gmail.com.
Shengxiang GeNational Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen 361102, China. sxge@xmu.edu.cn.
Xiangrong LiuSchool of Information Science and Technology, Xiamen University, Xiamen 361102, China. xrliu@xmu.edu.cn.ORCID 0000-0001-9885-1978
Xiangxiang ZengSchool of Information Science and Technology, Xiamen University, Xiamen 361102, China. xzeng@xmu.edu.cn.
Ningshao XiaNational Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen 361102, China. nsxia@xmu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent years, to infer phylogenies, which are NP-hard problems, more and more research has focused on using metaheuristics. Maximum Parsimony and Maximum Likelihood are two effective ways to conduct inference. Based on these methods, which can also be considered as the optimal criteria for phylogenies, various kinds of multi-objective metaheuristics have been used to reconstruct phylogenies. However, combining these two time-consuming methods results in those multi-objective metaheuristics being slower than a single objective. Therefore, we propose a novel, multi-objective optimization algorithm, MOEA-RC, to accelerate the processes of rebuilding phylogenies using structural information of elites in current populations. We compare MOEA-RC with two representative multi-objective algorithms, MOEA/D and NAGA-II, and a non-consensus version of MOEA-RC on three real-world datasets. The result is, within a given number of iterations, MOEA-RC achieves better solutions than the other algorithms.

Indexed as

AlgorithmsPhylogenyLikelihood FunctionsModels, GeneticSoftwareconsensusgenetic algorithmmany-objective optimizationphylogenies

Identifiers

PMID29278391
PMCPMC5796012

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.