Evidence map›Paper›PMID 29278368›Full record

ArticleInternational journal of molecular sciences2017

Structure and Molecular Dynamics Simulations of Protein Tyrosine Phosphatase Non-Receptor 12 Provide Insights into the Catalytic Mechanism of the Enzyme.

Hui Dong, Francesco Zonta, Shanshan Wang, Ke Song, Xin He, Miaomiao He, Yan Nie, Sheng Li

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Hui DongKey Laboratory of Tianjin Radiation and Molecular Nuclear Medicine, Institute of Radiation Medicine, Chinese Academy of Medical Sciences & Peking Union Medical College, Tianjin 300192, China. donghui@irm-cams.ac.cn.
Francesco ZontaShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai 201210, China. fzonta@shanghaitech.edu.cn.
Shanshan WangShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai 201210, China. wangss2@shanghaitech.edu.cn.
Ke SongShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai 201210, China. Songk@shanghaitech.edu.cn.
Xin HeKey Laboratory of Tianjin Radiation and Molecular Nuclear Medicine, Institute of Radiation Medicine, Chinese Academy of Medical Sciences & Peking Union Medical College, Tianjin 300192, China. hexin@irm-cams.ac.cn.
Miaomiao HeShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai 201210, China. hemm@shanghaitech.edu.cn.
Yan NieShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai 201210, China. nieyan@shanghaitech.edu.cn.
Sheng LiShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai 201210, China. lisheng@shanghaitech.edu.cn.
ShanghaiTech University · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein tyrosine phosphatase non-receptor 12 (PTPN12) is an important protein tyrosine phosphatase involved in regulating cell adhesion and migration as well as tumorigenesis. Here, we solved a crystal structure of the native PTPN12 catalytic domain with the catalytic cysteine (residue 231) in dual conformation (phosphorylated and unphosphorylated). Combined with molecular dynamics simulation data, we concluded that those two conformations represent different states of the protein which are realized during the dephosphorylation reaction. Together with docking and mutagenesis data, our results provide a molecular basis for understanding the catalytic mechanism of PTPN12 and its role in tumorigenesis.

Indexed as

Catalytic DomainCrystallography, X-RayHumansMolecular Dynamics SimulationMutationNeoplasmsProtein ConformationProtein Tyrosine Phosphatase, Non-Receptor Type 12Substrate SpecificityProtein Tyrosine Phosphatase, Non-Receptor Type 12PTPN12 protein, humanmolecular dynamicsPTPN12structure

Identifiers

PMID29278368
PMCPMC5796010
OpenAlexW2776095939

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.