Evidence map›Paper›PMID 29277555›Full record

ArticleInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases2018

Distribution of bat-borne viruses and environment patterns.

Aneta Afelt, Audrey Lacroix, Urszula Zawadzka-Pawlewska, Wojciech Pokojski, Philippe Buchy, Roger Frutos

Registry-linked trialAbstract read
In one paragraph

Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04716543 (One-health Approach in Epidemiological Investigation of SARS-CoV-2 in Laos), which is not on this map. Cited by 24 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04716543 unknown statusnot on this mapstarted 2021, after this paper: background citation

One-health Approach in Epidemiological Investigation of SARS-CoV-2 in Laos

TypeobservationalSponsorANRS, Emerging Infectious DiseasesRan2021 to 2022Enrolled5,400ConditionsInfluenza -Like Illness, Covid19ArmsILI and COVID-19 detection
3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 4 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Review
  6. Review
  7. Article
  8. Prevalence ofOne health (Amsterdam, Netherlands) · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Molecular Detection and Phylogenetic Analyses of DiversePathogens (Basel, Switzerland) · 2022
    Article
  13. Article
  14. There is no "origin" to SARS-CoV-2.Environmental research · 2022
    Article
  15. An Overview on the Epidemiology and Immunology of COVID-19.Journal of infection and public health · 2021
    Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Aneta AfeltInterdisciplinary Center for Mathematical and Computational Modelling, University of Warsaw, Tyniecka 15/17, 02-630 Warsaw, Poland. Electronic address: akafelt@uw.edu.pl.
Audrey LacroixInstitut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia; CIRAD, UMR 17, CIRAD-IRD, Montpellier, France.
Urszula Zawadzka-PawlewskaInstitute of Physical Geography, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw, Poland.
Wojciech PokojskiLaboratory of Spatial Information Systems, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw, Poland.
Philippe BuchyInstitut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia; GSK Vaccines R&D, 150 Beach road, # 22-00, 189720, Singapore.
Roger FrutosCIRAD, UMR 17, CIRAD-IRD, Montpellier, France; Université de Montpellier, IES, UMR 5214, CNRS-UM, Montpellier, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Environmental modifications are leading to biodiversity changes, loss and habitat disturbance. This in turn increases contacts between wildlife and hence the risk of transmission and emergence of zoonotic diseases. We analyzed the environment and land use using remote spatial data around the sampling locations of bats positive for coronavirus (21 sites) and astrovirus (11 sites) collected in 43 sites. A clear association between viruses and hosts was observed. Viruses associated to synanthropic bat genera, such as Myotis or Scotophilus were associated to highly transformed habitats with human presence while viruses associated to fruit bat genera were correlated with natural environments with dense forest, grassland areas and regions of high elevation. In particular, group C betacoronavirus were associated with mosaic habitats found in anthropized environments.

Indexed as

Environmental MicrobiologyAnimalsAstroviridaeCambodiaChiropteraCluster AnalysisCoronavirusGenetic VariationHumansLaosMicePhylogenyPhylogeographyRNA VirusesZoonosesBat virusesCambodiaEmerging diseasesEnvironmental analysisEvolution of environmentLao PDRSouth East Asia

Identifiers

PMID29277555
PMCPMC7106095

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.