Evidence map›Paper›PMID 29273011›Full record

ArticleBMC genomics2017

Time course study of the response to LPS targeting the pig immune gene networks.

Elena Terenina, Valérie Sautron, Caroline Ydier, Darya Bazovkina, Amélie Sevin-Pujol, Laure Gress, Yannick Lippi, Claire Naylies, Yvon Billon, Laurence Liaubet and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

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  10. 2-Hydroxyglutarate Metabolism Is Altered in anFrontiers in physiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Elena TereninaINRA, UMR 1388 GenPhySE, Université de Toulouse, INRA, INPT, ENVT, Castanet-Tolosan, F-31326, France. elena.mormede@inra.fr.
Valérie SautronINRA, UMR 1388 GenPhySE, Université de Toulouse, INRA, INPT, ENVT, Castanet-Tolosan, F-31326, France.
Caroline YdierINRA, UMR 1388 GenPhySE, Université de Toulouse, INRA, INPT, ENVT, Castanet-Tolosan, F-31326, France.
Darya BazovkinaDepartment of Behavioral Neurogenomics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, 630090, Russia.
Amélie Sevin-PujolINRA, UMR 1388 GenPhySE, Université de Toulouse, INRA, INPT, ENVT, Castanet-Tolosan, F-31326, France.
Laure GressINRA, UMR 1388 GenPhySE, Université de Toulouse, INRA, INPT, ENVT, Castanet-Tolosan, F-31326, France.
Yannick LippiToxalim (Research Centre in Food Toxicology), Université de Toulouse, INRA, ENVT, INP-Purpan, UPS, Toulouse, F-31027, France.
Claire NayliesToxalim (Research Centre in Food Toxicology), Université de Toulouse, INRA, ENVT, INP-Purpan, UPS, Toulouse, F-31027, France.
Yvon BillonINRA, UE 1372 GenESI, Surgeres, F-17700, France.
Laurence LiaubetINRA, UMR 1388 GenPhySE, Université de Toulouse, INRA, INPT, ENVT, Castanet-Tolosan, F-31326, France.
Pierre MormedeINRA, UMR 1388 GenPhySE, Université de Toulouse, INRA, INPT, ENVT, Castanet-Tolosan, F-31326, France.
Nathalie Villa-VialaneixMIAT, Université de Toulouse, INRA, Castanet-Tolosan, France.
École Nationale Vétérinaire de Toulouse · FRGénétique Physiologie et Systèmes d'Elevage · FRInstitut National Polytechnique de Toulouse · FRUniversité Fédérale de Toulouse Midi-Pyrénées · FRSiberian Branch of the Russian Academy of Sciences · RUUniversité Toulouse III - Paul Sabatier · FR

Funding

French National Research Agency (ANR) ANR-12-ADAP-0008
6 · The paper itself

Abstract

backgroundStress is a generic term used to describe non-specific responses of the body to all kinds of challenges. A very large variability in the response can be observed across individuals, depending on numerous conditioning factors like genetics, early influences and life history. As a result, there is a wide range of individual vulnerability and resilience to stress, also called robustness. The importance of robustness-related traits in breeding strategies is increasing progressively towards the production of animals with a high level of production under a wide range of climatic conditions and management systems, together with a lower environmental impact and a high level of animal welfare. The present study aims at describing blood transcriptomic, hormonal, and metabolic responses of pigs to a systemic challenge using lipopolysaccharide (LPS). The objective is to analyze the individual variation of the biological responses in relation to the activity of the HPA axis measured by the levels of plasma cortisol after LPS and ACTH in 120 juvenile Large White (LW) pigs. The kinetics of the response was measured with biological variables and whole blood gene expression at 4 time points. A multilevel statistical analysis was used to take into account the longitudinal aspect of the data.

resultsCortisol level reaches its peak 4 h after LPS injection. The characteristic changes of white blood cell count to LPS were observed, with a decrease of total count, maximal at t=+4 h, and the mirror changes in the respective proportions of lymphocytes and granulocytes. The lymphocytes / granulocytes ratio was maximal at t=+1 h. An integrative statistical approach was used and provided a set of candidate genes for kinetic studies and ongoing complementary studies focused on the LPS-stimulated inflammatory response.

conclusionsThe present study demonstrates the specific biomarkers indicative of an inflammation in swine. Furthermore, these stress responses persist for prolonged periods of time and at significant expression levels, making them good candidate markers for evaluating the efficacy of anti-inflammatory drugs.

Indexed as

Gene Regulatory NetworksTranscriptomeAnimalsBlood Cell CountFemaleGene Expression ProfilingHydrocortisoneImmunityKineticsLipopolysaccharidesMaleSwineHydrocortisoneLipopolysaccharidesCortisolHypothalamic-pituitary-adrenal (HPA) axisMicroarrayPigStressSystems biologyTime-course

Identifiers

PMID29273011
PMCPMC5741867
OpenAlexW2777681333

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.