Evidence map›Paper›PMID 29271185›Full record

ArticleGut and liver2018

Direct Detection of Drug-Resistant Hepatitis B Virus in Serum Using a Dendron-Modified Microarray.

Doo Hyun Kim, Hong Seok Kang, Seong-Suk Hur, Seobo Sim, Sung Hyun Ahn, Yong Kwang Park, Eun-Sook Park, Ah Ram Lee, Soree Park, So Young Kwon and 2 more

Open access · diamondAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Gut and liver, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Doo Hyun KimDepartment of Pharmacology, Center for Cancer Research and Diagnostic Medicine, IBST, Seoul, Korea.
Hong Seok KangDepartment of Pharmacology, Center for Cancer Research and Diagnostic Medicine, IBST, Seoul, Korea.
Seong-Suk HurDepartment of Pharmacology, Center for Cancer Research and Diagnostic Medicine, IBST, Seoul, Korea.
Seobo SimDepartment of Environmental and Tropical Medicine, Konkuk University School of Medicine, Seoul, Korea.
Sung Hyun AhnDepartment of Pharmacology, Center for Cancer Research and Diagnostic Medicine, IBST, Seoul, Korea.
Yong Kwang ParkDepartment of Pharmacology, Center for Cancer Research and Diagnostic Medicine, IBST, Seoul, Korea.
Eun-Sook ParkDepartment of Pharmacology, Center for Cancer Research and Diagnostic Medicine, IBST, Seoul, Korea.
Ah Ram LeeDepartment of Pharmacology, Center for Cancer Research and Diagnostic Medicine, IBST, Seoul, Korea.
Soree ParkDepartment of Pharmacology, Center for Cancer Research and Diagnostic Medicine, IBST, Seoul, Korea.
So Young KwonDepartment of Internal Medicine, Konkuk University School of Medicine, Seoul, Korea.
Jeong-Hoon LeeDepartment of Internal Medicine and Liver Research Institute, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, Korea.
Kyun-Hwan KimDepartment of Pharmacology, Center for Cancer Research and Diagnostic Medicine, IBST, Seoul, Korea.
Konkuk University · KRSeoul National University Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND/

aimsDirect sequencing is the gold standard for the detection of drug-resistance mutations in hepatitis B virus (HBV); however, this procedure is time-consuming, labor-intensive, and difficult to adapt to high-throughput screening. In this study, we aimed to develop a dendron-modified DNA microarray for the detection of genotypic resistance mutations and evaluate its efficiency.

methodsThe specificity, sensitivity, and selectivity of dendron-modified slides for the detection of representative drug-resistance mutations were evaluated and compared to those of conventional slides. The diagnostic accuracy was validated using sera obtained from 13 patients who developed viral breakthrough during lamivudine, adefovir, or entecavir therapy and compared with the accuracy of restriction fragment mass polymorphism and direct sequencing data.

resultsThe dendron-modified slides significantly outperformed the conventional microarray slides and were able to detect HBV DNA at a very low level (1 copy/µL). Notably, HBV mutants could be detected in the chronic hepatitis B patient sera without virus purification. The validation of our data revealed that this technique is fully compatible with sequencing data of drug-resistant HBV.

conclusionsWe developed a novel diagnostic technique for the simultaneous detection of several drug-resistance mutations using a dendron-modified DNA microarray. This technique can be directly applied to sera from chronic hepatitis B patients who show resistance to several nucleos(t)ide analogues.

Indexed as

AdenineDendrimersDNA, ViralDrug Resistance, ViralGuanineHepatitis B, ChronicHepatitis B virusHumansLamivudineMicroarray AnalysisMutationNucleic Acid Amplification TechniquesOrganophosphonatesReverse Transcriptase Polymerase Chain ReactionadefovirAdenineDendrimersDNA, ViralentecavirGuanineLamivudineOrganophosphonatesDendronDNA microarrayDrug resistanceHepatitis B virus

Identifiers

PMID29271185
PMCPMC5945265
OpenAlexW2781270170

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.