Evidence map›Paper›PMID 29271062›Full record

ArticleProtein science : a publication of the Protein Society2018

Contribution of buried distal amino acid residues in horse liver alcohol dehydrogenase to structure and catalysis.

Karthik K Shanmuganatham, Rachel S Wallace, Ann Ting-I Lee, Bryce V Plapp

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 3 countries.

Karthik K ShanmuganathamDepartment of Biochemistry, The University of Iowa, Iowa City, IA, 52242-1109.
Rachel S WallaceDepartment of Biochemistry, The University of Iowa, Iowa City, IA, 52242-1109.
Ann Ting-I LeeDepartment of Biochemistry, The University of Iowa, Iowa City, IA, 52242-1109.
Bryce V PlappDepartment of Biochemistry, The University of Iowa, Iowa City, IA, 52242-1109.ORCID 0000-0001-6790-5363
University of Iowa · US

Funding

Dynamic and Catalysis by Alcohol DehydrogenasesR01GM078446 · NIGMS · UNIVERSITY OF IOWA · PI PLAPP, BRYCE V · 2006 to 2009
$1.1M
NIGMS NIH HHS R01 GM078446
6 · The paper itself

Abstract

The dynamics of enzyme catalysis range from the slow time scale (∼ms) for substrate binding and conformational changes to the fast time (∼ps) scale for reorganization of substrates in the chemical step. The contribution of global dynamics to catalysis by alcohol dehydrogenase was tested by substituting five different, conserved amino acid residues that are distal from the active site and located in the hinge region for the conformational change or in hydrophobic clusters. X-ray crystallography shows that the structures for the G173A, V197I, I220 (V, L, or F), V222I, and F322L enzymes complexed with NAD

Indexed as

Amino Acid SubstitutionAlcohol DehydrogenaseAmino Acid MotifsAnimalsCatalysisCatalytic DomainCrystallography, X-RayHorsesKineticsModels, MolecularProtein ConformationAlcohol Dehydrogenasedistal substitutionsenzyme catalysishydrophobic clustersmutagenesisoxidoreductaseprotein dynamicsX-ray crystallography

Identifiers

PMID29271062
PMCPMC5818739
OpenAlexW2783310977

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.