Evidence map›Paper›PMID 29269835›Full record

ArticleNature communications2017

Mammalian display screening of diverse cystine-dense peptides for difficult to drug targets.

Zachary R Crook, Gregory P Sevilla, Della Friend, Mi-Youn Brusniak, Ashok D Bandaranayake, Midori Clarke, Mesfin Gewe, Andrew J Mhyre, David Baker, Roland K Strong and 2 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 76 citations in OpenAlex.

  1. Review
  2. Article
  3. Decoupling sequence and structure.Nature reviews. Chemistry · 2025
    Article
  4. Article
  5. Review
  6. Multiplex, multimodal mapping of variant effects in secreted proteins.bioRxiv : the preprint server for biology · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Directed evolution identifies high-affinity cystine-knot peptide agonists and antagonists of Wnt/β-catenin signaling.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Zachary R CrookClinical Research Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N Room D4-100, Seattle, WA, 98109, USA.ORCID http://orcid.org/0000-0002-1142-9748
Gregory P SevillaClinical Research Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N Room D4-100, Seattle, WA, 98109, USA.
Della FriendBasic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N Room B3-183, Seattle, WA, 98109, USA.
Mi-Youn BrusniakClinical Research Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N Room D4-100, Seattle, WA, 98109, USA.ORCID http://orcid.org/0000-0003-3950-1614
Ashok D BandaranayakeClinical Research Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N Room D4-100, Seattle, WA, 98109, USA.
Midori ClarkeClinical Research Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N Room D4-100, Seattle, WA, 98109, USA.ORCID http://orcid.org/0000-0002-2402-108X
Mesfin GeweBasic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N Room B3-183, Seattle, WA, 98109, USA.
Andrew J MhyreClinical Research Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N Room D4-100, Seattle, WA, 98109, USA.ORCID http://orcid.org/0000-0002-9206-3150
David BakerDepartment of Biochemistry, University of Washington, Molecular Engineering and Sciences, Box 351655, Seattle, WA, 98195, USA.
Roland K StrongBasic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N Room B3-183, Seattle, WA, 98109, USA.
Philip BradleyPublic Health Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N Room M1-B514, Seattle, WA, 98109, USA. pbradley@fredhutch.org.
James M OlsonClinical Research Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N Room D4-100, Seattle, WA, 98109, USA. jimmyo@uw.edu.
Fred Hutch Cancer Center · USUniversity of Washington · US

Funding

Testing a cancer patient-specific SARS-CoV-2 vaccine in chemotherapy- and radiation-treated pediatric brain tumor mouse modelsR01CA114567 · NCI · SEATTLE CHILDREN'S HOSPITAL · PI OLSON, JAMES M · 2006 to 2023
$4.9M
Infant and Toddler Brain TumorsR01CA155360 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI OLSON, JAMES M · 2011 to 2015
$1.8M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
PIF1 HELICASE AND TELOMERE REPLICATION CONTROLF32AG005740 · NIA · PRINCETON UNIVERSITY · PI FREUDENREICH, CATHERINE H · 1995 to 1997
–
NCI NIH HHS R01 CA114567NCI NIH HHS R01 CA155360NIA NIH HHS F32 AG005740NIH HHS S10 OD020069
6 · The paper itself

Abstract

Protein:protein interactions are among the most difficult to treat molecular mechanisms of disease pathology. Cystine-dense peptides have the potential to disrupt such interactions, and are used in drug-like roles by every clade of life, but their study has been hampered by a reputation for being difficult to produce, owing to their complex disulfide connectivity. Here we describe a platform for identifying target-binding cystine-dense peptides using mammalian surface display, capable of interrogating high quality and diverse scaffold libraries with verifiable folding and stability. We demonstrate the platform's capabilities by identifying a cystine-dense peptide capable of inhibiting the YAP:TEAD interaction at the heart of the oncogenic Hippo pathway, and possessing the potency and stability necessary for consideration as a drug development candidate. This platform provides the opportunity to screen cystine-dense peptides with drug-like qualities against targets that are implicated for the treatment of diseases, but are poorly suited for conventional approaches.

Indexed as

Amino Acid SequenceAnimalsCystineDrug DiscoveryEscherichia coli ProteinsGlycosylationHumansPeptide LibraryPeptidesProtein BindingProtein FoldingProtein Interaction MapsReproducibility of ResultsSaccharomyces cerevisiae ProteinsCystineEscherichia coli ProteinsPeptide LibraryPeptidesSaccharomyces cerevisiae Proteins

Identifiers

PMID29269835
PMCPMC5740061
OpenAlexW2774322031

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.