Evidence map›Paper›PMID 29269772›Full record

ArticleScientific reports2017

Cell Cycle Model System for Advancing Cancer Biomarker Research.

Iulia M Lazar, Ina Hoeschele, Juliana de Morais, Milagros J Tenga

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 8 citations in OpenAlex.

  1. Observational
  2. Review
  3. Article
  4. Cell Cycle-Related Clinical Applications.Methods in molecular biology (Clifton, N.J.) · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Partial enzymatic reactions: A missed opportunity in proteomics research.Rapid communications in mass spectrometry : RCM · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Iulia M LazarDepartment of Biological Sciences, Virginia Tech. 1981 Kraft Drive, Blacksburg, VA, 24061, USA. malazar@vt.edu.ORCID 0000-0001-7746-7889
Ina HoescheleDepartment of Statistics and Biocomplexity Institute, Virginia Tech 1015e Science Circle, Blacksburg, VA, 24061, USA.
Juliana de MoraisDepartment of Biological Sciences, Virginia Tech. 1981 Kraft Drive, Blacksburg, VA, 24061, USA.
Milagros J TengaDepartment of Biological Sciences, Virginia Tech. 1981 Kraft Drive, Blacksburg, VA, 24061, USA.
Virginia Tech · USBiocom · US

Funding

Microfluidic MALDI-MS Device for High-Throughput Proteomics & Biomarker DiscoveryR21CA126669 · NCI · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI LAZAR, MARIA IULIANA · 2008 to 2009
$317k
NCI NIH HHS R21 CA126669
6 · The paper itself

Abstract

Progress in understanding the complexity of a devastating disease such as cancer has underscored the need for developing comprehensive panels of molecular markers for early disease detection and precision medicine applications. The present study was conducted to assess whether a cohesive biological context can be assigned to protein markers derived from public data mining, and whether mass spectrometry can be utilized to screen for the co-expression of functionally related biomarkers to be recommended for further exploration in clinical context. Cell cycle arrest/release experiments of MCF7/SKBR3 breast cancer and MCF10 non-tumorigenic cells were used as a surrogate to support the production of proteins relevant to aberrant cell proliferation. Information downloaded from the scientific public domain was queried with bioinformatics tools to generate an initial list of 1038 cancer-associated proteins. Mass spectrometric analysis of cell extracts identified 352 proteins that could be matched to the public list. Differential expression, enrichment, and protein-protein interaction analysis of the proteomic data revealed several functionally-related clusters of relevance to cancer. The results demonstrate that public data derived from independent experiments can be used to inform biological research and support the development of molecular assays for probing the characteristics of a disease.

Indexed as

Cell CycleBiomarkers, TumorBiomedical ResearchCell Line, TumorHumansMass SpectrometryModels, BiologicalNeoplasmsProteomicsBiomarkers, Tumor

Identifiers

PMID29269772
PMCPMC5740075
OpenAlexW2771198778

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.