Evidence map›Paper›PMID 29268610›Full record

ArticleJournal of the American Chemical Society2018

Driving Protein Conformational Changes with Light: Photoinduced Structural Rearrangement in a Heterobimetallic Oxidase.

Pearson T Maugeri, Julia J Griese, Rui M Branca, Effie K Miller, Zachary R Smith, Jürgen Eirich, Martin Högbom, Hannah S Shafaat

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Photoinduced Dynamic Ligation in Metal-Organic Frameworks.Journal of the American Chemical Society · 2024
    Article
  5. Article
  6. Article
  7. Ether cross-link formation in the R2-like ligand-binding oxidase.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Pearson T MaugeriBiophysics Graduate Program, The Ohio State University , Columbus, Ohio 43210, United States.
Julia J GrieseDepartment of Biochemistry and Biophysics, Stockholm University , SE-106 91 Stockholm, Sweden.ORCID 0000-0003-3686-3062
Rui M BrancaDepartment of Oncology-Pathology, Science for Life Laboratory, Karolinska Institutet , SE-17165 Stockholm, Sweden.
Effie K MillerOhio State Biochemistry Program, The Ohio State University , Columbus, Ohio 43210, United States.
Zachary R SmithDepartment of Chemistry and Biochemistry, The Ohio State University , Columbus, Ohio 43210, United States.
Jürgen EirichDepartment of Oncology-Pathology, Science for Life Laboratory, Karolinska Institutet , SE-17165 Stockholm, Sweden.
Martin HögbomDepartment of Biochemistry and Biophysics, Stockholm University , SE-106 91 Stockholm, Sweden.
Hannah S ShafaatBiophysics Graduate Program, The Ohio State University , Columbus, Ohio 43210, United States.ORCID 0000-0003-0793-4650
The Ohio State University · USScience for Life Laboratory · SEStockholm University · SE

Funding

Cellular, molecular, and biochemical sciences training grantT32GM086252 · NIGMS · OHIO STATE UNIVERSITY · PI JACKMAN, JANE ELIZABETH, MUSIER-FORSYTH, KARIN M · 2011 to 2020
$2.0M
A Systems Biology Approach for Targeted Drug Discovery for LeishmaniasisR21AI127582 · NIAID · OHIO STATE UNIVERSITY · PI IBBA, MICHAEL, SATOSKAR, ABHAY R · 2017 to 2018
$401k
NIAID NIH HHS R21 AI127582NIGMS NIH HHS T32 GM086252
6 · The paper itself

Abstract

The heterobimetallic R2lox protein binds both manganese and iron ions in a site-selective fashion and activates oxygen, ultimately performing C-H bond oxidation to generate a tyrosine-valine cross-link near the active site. In this work, we demonstrate that, following assembly, R2lox undergoes photoinduced changes to the active site geometry and metal coordination motif. Through spectroscopic, structural, and mass spectrometric characterization, the photoconverted species is found to consist of a tyrosinate-bound iron center following light-induced decarboxylation of a coordinating glutamate residue and cleavage of the tyrosine-valine cross-link. This process occurs with high quantum efficiencies (Φ = 3%) using violet and near-ultraviolet light, suggesting that the photodecarboxylation is initiated via ligand-to-metal charge transfer excitation. Site-directed mutagenesis and structural analysis suggest that the cross-linked tyrosine-162 is the coordinating residue. One primary product is observed following irradiation, indicating potential use of this class of proteins, which contains a putative substrate channel, for controlled photoinduced decarboxylation processes, with relevance for in vivo functionality of R2lox as well as application in environmental remediation.

Indexed as

LightGeobacillusIronManganeseOxidation-ReductionOxidoreductasesPhotochemical ProcessesProtein ConformationIronManganeseOxidoreductases

Identifiers

PMID29268610
PMCPMC6272062
OpenAlexW2781259020

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.