Evidence map›Paper›PMID 29266664›Full record

ArticleAngewandte Chemie (International ed. in English)2018

Evaluation of the Stability of DNA i-Motifs in the Nuclei of Living Mammalian Cells.

Simon Dzatko, Michaela Krafcikova, Robert Hänsel-Hertsch, Tomas Fessl, Radovan Fiala, Tomas Loja, Daniel Krafcik, Jean-Louis Mergny, Silvie Foldynova-Trantirkova, Lukas Trantirek

Open access · hybridAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
10.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 237 citations in OpenAlex.

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45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Simon DzatkoCEITEC-Central European Institute of Technology, Masaryk University, Brno, 625 00, Czech Republic.
Michaela KrafcikovaCEITEC-Central European Institute of Technology, Masaryk University, Brno, 625 00, Czech Republic.
Robert Hänsel-HertschCancer Research (UK) Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Cambridge, CB2 0RE, UK.
Tomas FesslFaculty of Science, University of South Bohemia, 370 05, Ceske Budejovice, Czech Republic.
Radovan FialaCEITEC-Central European Institute of Technology, Masaryk University, Brno, 625 00, Czech Republic.
Tomas LojaCEITEC-Central European Institute of Technology, Masaryk University, Brno, 625 00, Czech Republic.
Daniel KrafcikCEITEC-Central European Institute of Technology, Masaryk University, Brno, 625 00, Czech Republic.
Jean-Louis MergnyUniversité de Bordeaux, INSERM U1212, CNRS UMR 5320, ARNA Laboratory, IECB, Pessac, France.
Silvie Foldynova-TrantirkovaCEITEC-Central European Institute of Technology, Masaryk University, Brno, 625 00, Czech Republic.
Lukas TrantirekCEITEC-Central European Institute of Technology, Masaryk University, Brno, 625 00, Czech Republic.ORCID 0000-0001-5948-4837
Central European Institute of Technology · CZCentre National de la Recherche Scientifique · FRSewanee: The University of the South · USUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

C-rich DNA has the capacity to form a tetra-stranded structure known as an i-motif. The i-motifs within genomic DNA have been proposed to contribute to the regulation of DNA transcription. However, direct experimental evidence for the existence of these structures in vivo has been missing. Whether i-motif structures form in complex environment of living cells is not currently known. Herein, using state-of-the-art in-cell NMR spectroscopy, we evaluate the stabilities of i-motif structures in the complex cellular environment. We show that i-motifs formed from naturally occurring C-rich sequences in the human genome are stable and persist in the nuclei of living human cells. Our data show that i-motif stabilities in vivo are generally distinct from those in vitro. Our results are the first to interlink the stability of DNA i-motifs in vitro with their stability in vivo and provide essential information for the design and development of i-motif-based DNA biosensors for intracellular applications.

Indexed as

Biosensing TechniquesCell NucleusDNAFluorescent DyesHeLa CellsHumansMicroscopy, ConfocalNuclear Magnetic Resonance, BiomolecularNucleotide MotifsDNAFluorescent DyesDNAi-motifsin-cell NMR spectroscopystructural biology

Identifiers

PMID29266664
PMCPMC5820743
OpenAlexW2779006175

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.