Evidence map›Paper›PMID 29265590›Full record

ArticleThe Journal of eukaryotic microbiology2018

A Riboswitch-based Inducible Gene Expression System for Trypanosoma brucei.

Teresa Cruz-Bustos, Srinivasan Ramakrishnan, Ciro D Cordeiro, Michael A Ahmed, Roberto Docampo

Open access · greenAbstract read
In one paragraph

Article in The Journal of eukaryotic microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A CRISPR/Cas9-riboswitch-Based Method for Downregulation of Gene Expression inFrontiers in cellular and infection microbiology · 2020
    Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Teresa Cruz-BustosCenter for Tropical and Emerging Global Diseases and Department of Cellular Biology, University of Georgia, Athens, Georgia, 30602.
Srinivasan RamakrishnanCenter for Tropical and Emerging Global Diseases and Department of Cellular Biology, University of Georgia, Athens, Georgia, 30602.
Ciro D CordeiroCenter for Tropical and Emerging Global Diseases and Department of Cellular Biology, University of Georgia, Athens, Georgia, 30602.
Michael A AhmedCenter for Tropical and Emerging Global Diseases and Department of Cellular Biology, University of Georgia, Athens, Georgia, 30602.
Roberto DocampoCenter for Tropical and Emerging Global Diseases and Department of Cellular Biology, University of Georgia, Athens, Georgia, 30602.ORCID 0000-0003-4229-8784
University of Georgia · US

Funding

Calcium signaling in Trypanosoma bruceiR01AI108222 · NIAID · UNIVERSITY OF GEORGIA · PI DOCAMPO, ROBERTO · 2014 to 2017
$1.5M
NIAID NIH HHS R01 AI108222
6 · The paper itself

Abstract

Generation of conditional mutants in Trypanosoma brucei can be done by the use of RNA interference (RNAi). However, RNAi frequently produces off target effects. Here, we present an alternative strategy in which the glmS ribozyme is inserted in the C-terminal region of one allele of a GOI and effectively knocks it down in response to the presence of glucosamine in the culture medium. Using several endogenous genes, we show that the glmS ribozyme cleaves the mRNA in vivo leading to reduction in mRNA and protein expression following glucosamine treatment in both T. brucei procyclic and bloodstream forms. Glucosamine-induced ribozyme activation can be rapidly reversed by removing the inducer. In summary, the glmS ribozyme could be used as a tool to study essential genes in T. brucei.

Indexed as

Gene Knockout TechniquesBacterial ProteinsGene Expression RegulationGlucosamineGlutamine-Fructose-6-Phosphate Transaminase (Isomerizing)Phosphoric Monoester HydrolasesRiboswitchRNA, CatalyticRNA InterferenceRNA, MessengerTrypanosoma brucei bruceiBacterial Proteinscomponent S, glutamate mutase protein, BacteriaGlucosamineGlutamine-Fructose-6-Phosphate Transaminase (Isomerizing)Phosphoric Monoester HydrolasesRiboswitchRNA, CatalyticRNA, MessengerGlucosamineribozyme

Identifiers

PMID29265590
PMCPMC5935546
OpenAlexW2781131614

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.