ArticlePlant biotechnology journal2018
Dissection of the genetic architecture of three seed-quality traits and consequences for breeding in Brassica napus.
Article in Plant biotechnology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.
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Who cites it
68 citing papers in PubMed.
- Identification of candidate genes regulating seed oil and protein content in Brassica napus via integrated genome-wide association and transcriptome analysis.BMC plant biology · 2026Article
- Rare Natural SNP Activates SHOOT APICAL MERISTEM ENLARGER1 to Increase Branch Number and Silique Number on the Main Inflorescence in Brassica napus.Plant biotechnology journal · 2026Article
- Transcriptome Analysis Reveals Intensity-Dependent Regulation of UV-B Radiation on Glucosinolate Biosynthesis in Rapeseed Leaves.Plants (Basel, Switzerland) · 2026Article
- Glucosinolates inInternational journal of molecular sciences · 2026Review
- Genome-wide association studies unravel genomic regions and candidate genes associated with Aspergillus flavus resistance in peanut kernels.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Unlocking the Genetic Blueprint of Erucic Acid Content in Mustard (Brassica napus): A Meta-QTL Exploration.TheScientificWorldJournal · 2026Article
- NIRS chemometrics for rapid nutritional profiling of vegetable pea (Pisum sativum L.) germplasm.Scientific reports · 2025Article
- Substantial non-homologous recombination and structural variation results from Brassica AABC and CCAB hybrid meiosis.The Plant journal : for cell and molecular biology · 2025Article
- Genome-Wide Identification ofPlants (Basel, Switzerland) · 2025Article
- The Multi-Pistil Phenomenon in Higher Plants.Plants (Basel, Switzerland) · 2025Review
- Targeted mutagenesis and functional marker development of two Bna.TAC1s conferring novel rapeseed germplasm with compact architecture.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Genome-wide association study reveals genetic loci for seed density per silique in rapeseed (Brassica napus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Integrated Transcriptome and Metabolome Analysis Reveals the Resistance Mechanisms ofInternational journal of molecular sciences · 2025Article
- Genome-wide association study reveals the genetic basis of vitamin C content in rapeseed (Frontiers in plant science · 2025Article
- Multiomics dissection of Brassica napus L. lateral roots and endophytes interactions under phosphorus starvation.Nature communications · 2024Article
- Genome Analysis ofInternational journal of molecular sciences · 2024Article
- Genome-Wide Profiling of the ACTIN Gene Family and Its Implications for Agronomic Traits inInternational journal of molecular sciences · 2024Article
- Rapeseed Flower Counting Method Based on GhP2-YOLO and StrongSORT Algorithm.Plants (Basel, Switzerland) · 2024Article
- Envirotyping within a multi-environment trial allowed identifying genetic determinants of winter oilseed rape yield stability.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- The story of a decade: Genomics, functional genomics, and molecular breeding in Brassica napus.Plant communications · 2024Review
8 more citing papers are in PubMed but not listed here.
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Authors and funding
11 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genome-wide association studies (GWASs) combining high-throughput genome resequencing and phenotyping can accelerate the dissection of genetic architecture and identification of genes for plant complex traits. In this study, we developed a rapeseed genomic variation map consisting of 4 542 011 SNPs and 628 666 INDELs. GWAS was performed for three seed-quality traits, including erucic acid content (EAC), glucosinolate content (GSC) and seed oil content (SOC) using 3.82 million polymorphisms in an association panel. Six, 49 and 17 loci were detected to be associated with EAC, GSC and SOC in multiple environments, respectively. The mean total contribution of these loci in each environment was 94.1% for EAC and 87.9% for GSC, notably higher than that for SOC (40.1%). A high correlation was observed between phenotypic variance and number of favourable alleles for associated loci, which will contribute to breeding improvement by pyramiding these loci. Furthermore, candidate genes were detected underlying associated loci, based on functional polymorphisms in gene regions where sequence variation was found to correlate with phenotypic variation. Our approach was validated by detection of well-characterized FAE1 genes at each of two major loci for EAC on chromosomes A8 and C3, along with MYB28 genes at each of three major loci for GSC on chromosomes A9, C2 and C9. Four novel candidate genes were detected by correlation between GSC and SOC and observed sequence variation, respectively. This study provides insights into the genetic architecture of three seed-quality traits, which would be useful for genetic improvement of B. napus.
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