Evidence map›Paper›PMID 29264741›Full record

ArticleInternational journal of hematology2018

Rearrangement of VPS13B, a causative gene of Cohen syndrome, in a case of RUNX1-RUNX1T1 leukemia with t(8;12;21).

Akihiro Abe, Yukiya Yamamoto, Akira Katsumi, Akinao Okamoto, Masutaka Tokuda, Yoko Inaguma, Kiyoko Yamamoto, Masamitsu Yanada, Tadaharu Kanie, Akihiro Tomita and 5 more

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In one paragraph

Article in International journal of hematology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Akihiro AbeDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan. aakihiro@fijita-hu.ac.jp.ORCID http://orcid.org/0000-0003-1773-5698
Yukiya YamamotoDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan.
Akira KatsumiNational Center for Geriatrics and Gerontology, Obu, Aichi, Japan.
Akinao OkamotoDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan.
Masutaka TokudaDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan.
Yoko InagumaDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan.
Kiyoko YamamotoDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan.
Masamitsu YanadaDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan.
Tadaharu KanieDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan.
Akihiro TomitaDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan.
Yoshiki AkatsukaDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan.
Masataka OkamotoDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan.
Toshiki KameyamaDivision of Gene Expression Mechanism, Institute for Comprehensive Medical Science, Fujita Health University, Toyoake, Aichi, Japan.
Akila MayedaDivision of Gene Expression Mechanism, Institute for Comprehensive Medical Science, Fujita Health University, Toyoake, Aichi, Japan.
Nobuhiko EmiDepartment of Hematology, Fujita Health University, 98 Dengakugakubo, Toyoake, Aichi, 470-1192, Japan.
Fujita Health University Hospital · JPFujita Health University · JPNational Center for Geriatrics and Gerontology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Variant chromosomal translocations associated with t(8;21) are observed in 3-4% of acute myeloid leukemia (AML) cases with a RUNX1-RUNX1T1 fusion gene. However, the molecular events that occur in variants of t(8;21) are not well characterized. In the present study, we report genetic features of a variant three-way translocation of t(8;12;21)(q22;p11;q22) in a patient with AML. In this patient, leukemia cells lacked azurophilic granules, which does not correspond with the classic features of t(8;21). RNA-seq analysis revealed that TM7SF3 at 12p11 was fused to VPS13B at 8q22 and VPS13B to RUNX1, in addition to RUNX1-RUNX1T1. VPS13B was located near RUNX1T1 and both were localized at the same chromosomal bands. The reading frames of TM7SF3 and VPS13B did not match to those of VPS13B and RUNX1, respectively. Disruption of VPS13B causes Cohen syndrome, which presents intermittent neutropenia with a left-shifted granulopoiesis in the bone marrow. Disruption of VPS13B may thus cause the unusual features of RUNX1-RUNX1T1 leukemia. Our case indicates that rearrangement of VPS13B may be additional genetic events in variant t(8;21).

Indexed as

Chromosomes, Human, Pair 12Chromosomes, Human, Pair 21Chromosomes, Human, Pair 8Core Binding Factor Alpha 2 SubunitDevelopmental DisabilitiesFemaleFingersGene RearrangementHumansIntellectual DisabilityLeukemia, Myeloid, AcuteMicrocephalyMiddle AgedMuscle HypotoniaMyopiaObesityCore Binding Factor Alpha 2 SubunitRUNX1 protein, humanRUNX1T1 protein, humanRUNX1 Translocation Partner 1 ProteinVesicular Transport ProteinsVPS13B protein, human3-Way translocationAMLRUNX1–RUNX1T1TM7SF3VPS13B

Identifiers

PMID29264741
OpenAlexW2776826013

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.