Evidence map›Paper›PMID 29264716›Full record

ArticleAMB Express2017

De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063.

Igor Vinicius Ramos Otero, Milene Ferro, Maurício Bacci, Henrique Ferreira, Lara Durães Sette

Open access · goldAbstract read
In one paragraph

Article in AMB Express, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Fungi from Antarctic marine sediment: characterization and assessment for textile dye decolorization and detoxification.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  2. Identification of Laccase Family ofInternational journal of molecular sciences · 2024
    Article
  3. Article
  4. Review
  5. Article
  6. Purification and Characterization of Two Novel Laccases fromJournal of fungi (Basel, Switzerland) · 2020
    Article
  7. Harnessing the sponge microbiome for industrial biocatalysts.Applied microbiology and biotechnology · 2020
    Review
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Igor Vinicius Ramos OteroDepartamento de Bioquímica e Microbiologia, Instituto de Biociências-IB, Universidade Estadual Paulista Júlio de Mesquita Filho-UNESP, 24A, 1515, Rio Claro, SP, 13506-900, Brazil.ORCID http://orcid.org/0000-0001-7231-6328
Milene FerroCentro de Estudos de Insetos Sociais, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita Filho, Rio Claro, Brazil.
Maurício BacciDepartamento de Bioquímica e Microbiologia, Instituto de Biociências-IB, Universidade Estadual Paulista Júlio de Mesquita Filho-UNESP, 24A, 1515, Rio Claro, SP, 13506-900, Brazil.
Henrique FerreiraDepartamento de Bioquímica e Microbiologia, Instituto de Biociências-IB, Universidade Estadual Paulista Júlio de Mesquita Filho-UNESP, 24A, 1515, Rio Claro, SP, 13506-900, Brazil.
Lara Durães SetteDepartamento de Bioquímica e Microbiologia, Instituto de Biociências-IB, Universidade Estadual Paulista Júlio de Mesquita Filho-UNESP, 24A, 1515, Rio Claro, SP, 13506-900, Brazil. larasette@rc.unesp.br.ORCID http://orcid.org/0000-0002-5980-3786
Universidade Estadual Paulista (Unesp) · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 159488/2014-1Fundação de Amparo à Pesquisa do Estado de São Paulo 2013/19486-0Fundação de Amparo à Pesquisa do Estado de São Paulo 2014/17950-4Fundação de Amparo à Pesquisa do Estado de São Paulo 2016/07957-7
6 · The paper itself

Abstract

Laccases are multicopper oxidases that are able to catalyze reactions involving a range of substrates, including phenols and amines, and this ability is related to the existence of different laccases. Basidiomycetes usually have more than one gene for laccase, but until now, this feature has not been demonstrated in a marine-derived fungus. Peniophora sp. CBMAI 1063 is a basidiomycete fungus isolated from a marine sponge that exhibits the ability to secrete significant amounts of laccase in saline conditions. In the present study, we identified laccase sequences from the transcriptome of Peniophora sp. CBMAI 1063 and used them to perform different molecular in silico analyses. The results revealed the presence of at least eight putative genes, which may encode ten different laccases with peptide lengths ranging from 482 to 588 aa and molecular weights ranging from 53.5 to 64.4 kDa. These laccases seem to perform extracellular activities, with the exception of one that may represent an intracellular laccase. The 10 predicted laccases expressed by Peniophora sp. CBMAI 1063 in laccase-induced media showed different patterns of N-glycosylation and isoelectric points and are divided into two classes based on the residue associated with the regulation of the redox potential of the enzyme. None of the predicted laccases showed more than 61% similarity to other fungal laccases. Based on the differences among the laccases expressed by Peniophora sp. CBMAI 1063, this marine-derived basidiomycete represents a valuable resource with strong potential for biotechnological exploitation.

Indexed as

LaccaseMarine-derived fungiMulticopper oxidaseTranscriptome

Identifiers

PMID29264716
PMCPMC5738328
OpenAlexW2776883703

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.