Evidence map›Paper›PMID 29263273›Full record

ArticleJournal of virology2018

Efficient Translation of Epstein-Barr Virus (EBV) DNA Polymerase Contributes to the Enhanced Lytic Replication Phenotype of M81 EBV.

Trenton Mel Church, Dinesh Verma, Jacob Thompson, Sankar Swaminathan

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
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  7. Review
  8. Epstein-Barr virus co-opts TFIIH component XPB to specifically activate essential viral lytic promoters.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Trenton Mel ChurchDivision of Infectious Diseases, Department of Medicine, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Dinesh VermaDivision of Infectious Diseases, Department of Medicine, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Jacob ThompsonDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Sankar SwaminathanDivision of Infectious Diseases, Department of Medicine, University of Utah School of Medicine, Salt Lake City, Utah, USA sankar.swaminathan@hsc.utah.edu.ORCID https://orcid.org/0000-0002-9773-1277
University of Utah · US

Funding

POSTTRANSCRIPTIONAL GENE REGULATION BY EBV SM PROTEINR01CA081133 · NCI · UNIVERSITY OF UTAH · PI SWAMINATHAN, SANKAR · 1999 to 2022
$4.9M
Restriction of Oncogenic Herpesviruses by Host Cell FactorsI01BX002262 · VA · VA SALT LAKE CITY HEALTHCARE SYSTEM · PI SWAMINATHAN, SANKAR · 2015 to 2019
–
BLRD VA I01 BX002262NCI NIH HHS R01 CA081133
6 · The paper itself

Abstract

Epstein-Barr virus (EBV) is linked to the development of both lymphoid and epithelial malignancies worldwide. The M81 strain of EBV, isolated from a Chinese patient with nasopharyngeal carcinoma (NPC), demonstrates spontaneous lytic replication and high-titer virus production in comparison to the prototype B95-8 EBV strain. Genetic comparisons of M81 and B95-8 EBVs were previously been performed in order to determine if the hyperlytic property of M81 is associated with sequence differences in essential lytic genes. EBV SM is an RNA-binding protein expressed during early lytic replication that is essential for virus production. We compared the functions of M81 SM and B95-8 SM and demonstrate that polymorphisms in SM do not contribute to the lytic phenotype of M81 EBV. However, the expression level of the EBV DNA polymerase protein was much higher in M81- than in B95-8-infected cells. The relative deficiency in the expression of B95-8 DNA polymerase was related to the B95-8 genome deletion, which truncates the BALF5 3' untranslated region (UTR). Similarly, the insertion of bacmid DNA into the widely used recombinant B95-8 bacmid creates an inefficient BALF5 3' UTR. We further showed that the while SM is required for and facilitates the efficient expression of both M81 and B95-8 mRNAs regardless of the 3' UTR, the BALF5 3' UTR sequence is important for BALF5 protein translation. These data indicate that the enhanced lytic replication and virus production of M81 compared to those of B95-8 are partly due to the robust translation of EBV DNA polymerase required for viral DNA replication due to a more efficient BALF5 3' UTR in M81.

Indexed as

Genome, ViralProtein Biosynthesis3' Untranslated RegionsCarcinomaDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA ReplicationDNA, ViralEpstein-Barr Virus InfectionsHEK293 CellsHerpesvirus 4, HumanHumansNasopharyngeal CarcinomaNasopharyngeal NeoplasmsNeoplasm ProteinsViral Proteins3' Untranslated RegionsBALF5 protein, Epstein-barr virusDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA, ViralNeoplasm ProteinsViral ProteinsDNA polymeraseDNA replicationEBVEpstein-Barr virusherpesvirusposttranscriptional control mechanismsposttranscriptional RNA-binding proteinsSM proteintranscriptional regulationtranslational control

Identifiers

PMID29263273
PMCPMC5827364
OpenAlexW2790643865

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.