Evidence map›Paper›PMID 29263261›Full record

ArticleJournal of virology2018

The Host Factor AUF1 p45 Supports Flavivirus Propagation by Triggering the RNA Switch Required for Viral Genome Cyclization.

Susann Friedrich, Susanne Engelmann, Tobias Schmidt, Grit Szczepankiewicz, Sandra Bergs, Uwe G Liebert, Beate M Kümmerer, Ralph P Golbik, Sven-Erik Behrens

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 33 citations in OpenAlex.

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  17. Universal RNAFrontiers in microbiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Susann FriedrichInstitute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle, Germany susann.friedrich@biochemtech.uni-halle.de sven.behrens@biochemtech.uni-halle.de.
Susanne EngelmannInstitute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle, Germany.
Tobias SchmidtInstitute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle, Germany.
Grit SzczepankiewiczInstitute of Virology, Leipzig University, Leipzig, Germany.
Sandra BergsInstitute of Virology, Leipzig University, Leipzig, Germany.
Uwe G LiebertInstitute of Virology, Leipzig University, Leipzig, Germany.
Beate M KümmererInstitute of Virology, University of Bonn Medical Centre, Bonn, Germany.
Ralph P GolbikInstitute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle, Germany.
Sven-Erik BehrensInstitute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle, Germany susann.friedrich@biochemtech.uni-halle.de sven.behrens@biochemtech.uni-halle.de.
Martin Luther University Halle-Wittenberg · DELeipzig University · DEUniversity of Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In previous studies, we showed that the cellular RNA-binding protein AUF1 supports the replication process of the flavivirus West Nile virus. Here we demonstrate that the protein also enables effective proliferation of dengue virus and Zika virus, indicating that AUF1 is a general flavivirus host factor. Further studies demonstrated that the AUF1 isoform p45 significantly stimulates the initiation of viral RNA replication and that the protein's RNA chaperone activity enhances the interactions of the viral 5'UAR and 3'UAR genome cyclization sequences. Most interestingly, we observed that AUF1 p45 destabilizes not only the 3'-terminal stem-loop (3'SL) but also 5'-terminal stem-loop B (SLB) of the viral genome. RNA structure analyses revealed that AUF1 p45 increases the accessibility of defined nucleotides within the 3'SL and SLB and, in this way, exposes both UAR cyclization elements. Conversely, AUF1 p45 does not modulate the fold of stem-loop A (SLA) at the immediate genomic 5' end, which is proposed to function as a promoter of the viral RNA-dependent RNA polymerase (RdRp). These findings suggest that AUF1 p45, by destabilizing specific stem-loop structures within the 5' and 3' ends of the flaviviral genome, assists genome cyclization and concurrently enables the RdRp to initiate RNA synthesis. Our study thus highlights the role of a cellular RNA-binding protein inducing a flaviviral RNA switch that is crucial for viral replication.

Indexed as

Genome, ViralNucleic Acid ConformationFlavivirusHeterogeneous-Nuclear Ribonucleoprotein DHeterogeneous Nuclear Ribonucleoprotein D0HumansRNA-Dependent RNA PolymeraseRNA, ViralViral ProteinsVirus ReplicationHeterogeneous-Nuclear Ribonucleoprotein DHeterogeneous Nuclear Ribonucleoprotein D0HNRNPD protein, humanRNA-Dependent RNA PolymeraseRNA, ViralViral ProteinsAUF1dengue virusflavivirushost factorRNA chaperoneRNA cyclizationRNA-protein interactionRNA replicationWest Nile virusZika virus

Identifiers

PMID29263261
PMCPMC5827407
OpenAlexW2779700785

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.