Evidence map›Paper›PMID 29262840›Full record

ArticleParasites & vectors2017

Reptile-associated Borrelia species in the goanna tick (Bothriocroton undatum) from Sydney, Australia.

Jessica L Panetta, Radek Šíma, Nichola E D Calvani, Ondřej Hajdušek, Shona Chandra, Jessica Panuccio, Jan Šlapeta

Abstract readEvaluation Study
In one paragraph

Article in Parasites & vectors, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Tick-borne zoonotic flaviviruses andOne health (Amsterdam, Netherlands) · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Molecular evidence ofFrontiers in veterinary science · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Reptile vector-borne diseases of zoonotic concern.International journal for parasitology. Parasites and wildlife · 2021
    Review
  15. Molecular Detection of NovelPathogens (Basel, Switzerland) · 2021
    Article
  16. Review
  17. Article
  18. Current debates and advances in tick microbiome research.Current research in parasitology & vector-borne diseases · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jessica L PanettaSydney School of Veterinary Science, Faculty of Science, University of Sydney, Sydney, NSW, 2006, Australia.
Radek ŠímaInstitute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branišovská 31, 37005, České Budějovice, Czech Republic.
Nichola E D CalvaniSydney School of Veterinary Science, Faculty of Science, University of Sydney, Sydney, NSW, 2006, Australia.
Ondřej HajdušekInstitute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branišovská 31, 37005, České Budějovice, Czech Republic.
Shona ChandraSydney School of Veterinary Science, Faculty of Science, University of Sydney, Sydney, NSW, 2006, Australia.
Jessica PanuccioSydney School of Veterinary Science, Faculty of Science, University of Sydney, Sydney, NSW, 2006, Australia.
Jan ŠlapetaSydney School of Veterinary Science, Faculty of Science, University of Sydney, Sydney, NSW, 2006, Australia. jan.slapeta@sydney.edu.au.ORCID http://orcid.org/0000-0003-1459-9117

Funding

Czech Science Foundation 17-27386SCzech Science Foundation 17-27393S
6 · The paper itself

Abstract

backgroundKnowledge on the capacity of Australian ticks to carry Borrelia species is currently limited or missing. To evaluate the potential of ticks to carry bacterial pathogens and their DNA, it is imperative to have a robust workflow that maximises recovery of bacterial DNA within ticks in order to enable accurate identification. By exploiting the bilateral anatomical symmetry of ticks, we were able to directly compare two DNA extraction methods for 16S rRNA gene diversity profiling and pathogen detection. We aimed to assess which combination of DNA extraction and 16S rRNA hypervariable region enables identification of the greatest bacterial diversity, whilst minimising bias, and providing the greatest capacity for the identification of Borrelia spp.

resultsWe collected Australian endemic ticks (Bothriocroton undatum), isolated DNA from equal tick halves using two commercial DNA extraction methods and sequenced samples using V1-V3 and V3-V4 16S rRNA gene diversity profiling assays. Two distinct Borrelia spp. operational taxonomic units (OTUs) were detected using the V1-V3 16S rRNA hypervariable region and matching Borrelia spp. sequences were obtained using a conventional nested-PCR. The tick 16S rRNA gene diversity profile was dominated by Rickettsia spp. (98-99%), while the remaining OTUs belonged to Proteobacteria (51-81%), Actinobacteria (6-30%) and Firmicutes (2-7%). Multiple comparisons tests demonstrated biases in each of the DNA extraction kits towards different bacterial taxa.

conclusionsTwo distinct Borrelia species belonging to the reptile-associated Borrelia group were identified. Our results show that the method of DNA extraction can promote bias in the final microbiota identified. We determined an optimal DNA extraction method and 16S rRNA gene diversity profile assay that maximises detection of Borrelia species.

Indexed as

AnimalsAustraliaBorreliaCluster AnalysisDNA, BacterialDNA, RibosomalEntomologyIxodidaeMicrobiological TechniquesPhylogenyRNA, Ribosomal, 16SSensitivity and SpecificitySequence Analysis, DNADNA, BacterialDNA, RibosomalRNA, Ribosomal, 16SBorreliaBothriocroton undatumCoxiella burnetiiDNA extractionGoanna tickIlluminaIxodidaeMiSeqNGS

Identifiers

PMID29262840
PMCPMC5738880

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.