Evidence map›Paper›PMID 29262327›Full record

ArticleCell reports2017

Transcriptional Changes during Naturally Acquired Zika Virus Infection Render Dendritic Cells Highly Conducive to Viral Replication.

Xiaoming Sun, Stephane Hua, Hsiao-Rong Chen, Zhengyu Ouyang, Kevin Einkauf, Samantha Tse, Kevin Ard, Andrea Ciaranello, Sigal Yawetz, Paul Sax and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 79 citations in OpenAlex.

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  10. Review
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  12. Metabolic response to CNS infection with flaviviruses.Journal of neuroinflammation · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Xiaoming SunRagon Institute of MGH, MIT and Harvard, Massachusetts General Hospital, Boston, MA.
Stephane HuaRagon Institute of MGH, MIT and Harvard, Massachusetts General Hospital, Boston, MA.
Hsiao-Rong ChenRagon Institute of MGH, MIT and Harvard, Massachusetts General Hospital, Boston, MA.
Zhengyu OuyangRagon Institute of MGH, MIT and Harvard, Massachusetts General Hospital, Boston, MA.
Kevin EinkaufRagon Institute of MGH, MIT and Harvard, Massachusetts General Hospital, Boston, MA.
Samantha TseRagon Institute of MGH, MIT and Harvard, Massachusetts General Hospital, Boston, MA.
Kevin ArdInfectious Disease Division, Massachusetts General Hospital, Boston, MA.
Andrea CiaranelloInfectious Disease Division, Massachusetts General Hospital, Boston, MA.
Sigal YawetzInfectious Disease Division, Brigham and Women's Hospital, Boston, MA.
Paul SaxInfectious Disease Division, Brigham and Women's Hospital, Boston, MA.
Eric S RosenbergInfectious Disease Division, Massachusetts General Hospital, Boston, MA.
Mathias LichterfeldRagon Institute of MGH, MIT and Harvard, Massachusetts General Hospital, Boston, MA; Infectious Disease Division, Brigham and Women's Hospital, Boston, MA.
Xu G YuRagon Institute of MGH, MIT and Harvard, Massachusetts General Hospital, Boston, MA; Infectious Disease Division, Brigham and Women's Hospital, Boston, MA. Electronic address: xyu@mgh.harvard.edu.
Ragon Institute of MGH, MIT and Harvard · USBrigham and Women's Hospital · USMassachusetts General Hospital · US

Funding

Immunoregulatory Function of Myelomonocytic Receptors in HIV-1 InfectionR01AI078799 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI YU, XU · 2008 to 2017
$4.1M
A systems biology approach to fingerprint HIV immune defense in Elite ControllersR01HL134539 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI YU, XU · 2016 to 2019
$3.3M
Molecular basis of myelomonocytic receptor function in HIV-1 infectionR01AI087452 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI SUNDBERG, ERIC JOHN · 2010 to 2014
$2.1M
A Microengraving Technology for the Study of Latently HIV-infected Primary CellsR01AI089339 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI YU, XU · 2010 to 2013
$1.6M
Targeting HIV-1 persistence with Interferon-aR33AI116228 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI YU, XU · 2016 to 2018
$1.5M
A systems biology approach to fingerprint HIV immune defense in Elite ControllersR56HL126554 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI YU, XU · 2014 to 2014
$886k
Targeting HIV-1 persistence with Interferon-aR21AI116228 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI YU, XU · 2014 to 2015
$479k
T memory stem cell aging in HIV-1 infectionR21HL121890 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI YU, XU · 2014 to 2015
$475k
NHLBI NIH HHS R01 HL134539NHLBI NIH HHS R21 HL121890NHLBI NIH HHS R56 HL126554NIAID NIH HHS R01 AI078799NIAID NIH HHS R01 AI087452NIAID NIH HHS R01 AI089339NIAID NIH HHS R21 AI116228NIAID NIH HHS R33 AI116228
6 · The paper itself

Abstract

Although dendritic cells are among the human cell population best equipped for cell-intrinsic antiviral immune defense, they seem highly susceptible to infection with the Zika virus (ZIKV). Using highly purified myeloid dendritic cells isolated from individuals with naturally acquired acute infection, we here show that ZIKV induces profound perturbations of transcriptional signatures relative to healthy donors. Interestingly, we noted a remarkable downregulation of antiviral interferon-stimulated genes and innate immune sensors, suggesting that ZIKV can actively suppress interferon-dependent immune responses. In contrast, several host factors known to support ZIKV infection were strongly upregulated during natural ZIKV infection; these transcripts included AXL, the main entry receptor for ZIKV; SOCS3, a negative regulator of ISG expression; and IDO-1, a recognized inducer of regulatory T cell responses. Thus, during in vivo infection, ZIKV can transform the transcriptome of dendritic cells in favor of the virus to render these cells highly conducive to ZIKV infection.

Indexed as

TranscriptomeVirus ReplicationAdultAxl Receptor Tyrosine KinaseCell LineCells, CulturedDendritic CellsFemaleHumansIndoleamine-Pyrrole 2,3,-DioxygenaseProto-Oncogene ProteinsReceptor Protein-Tyrosine KinasesSuppressor of Cytokine Signaling 3 ProteinZika VirusZika Virus InfectionAxl Receptor Tyrosine KinaseIDO1 protein, humanIndoleamine-Pyrrole 2,3,-DioxygenaseProto-Oncogene ProteinsReceptor Protein-Tyrosine KinasesSOCS3 protein, humanSuppressor of Cytokine Signaling 3 Proteinacute infectionAXLdendritic cellsflavivirusIDO-1interferon stimulated genesRNA-seqSOCS3Zika virus

Identifiers

PMID29262327
PMCPMC5751936
OpenAlexW2780514374

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.