Evidence map›Paper›PMID 29260977›Full record

ArticleAutophagy2018

Pex3 and Atg37 compete to regulate the interaction between the pexophagy receptor, Atg30, and the Hrr25 kinase.

Katarzyna Zientara-Rytter, Katharine Ozeki, Taras Y Nazarko, Suresh Subramani

Open access · bronzeAbstract read
In one paragraph

Article in Autophagy, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 34 citations in OpenAlex.

  1. Guideline
  2. Pooled it
  3. Core principles of autophagy initiation mechanisms.Nature structural & molecular biology · 2026
    Review
  4. Article
  5. Article
  6. Characterizing the Role ofMicroorganisms · 2024
    Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Pexophagy: A Model for Selective Autophagy.International journal of molecular sciences · 2020
    Review
  16. Review
  17. Multiple Functions of ATG8 Family Proteins in Plant Autophagy.Frontiers in cell and developmental biology · 2020
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Katarzyna Zientara-Ryttera Section of Molecular Biology, Division of Biological Sciences , University California , San Diego , CA 92093-0322 , USA.
Katharine Ozekia Section of Molecular Biology, Division of Biological Sciences , University California , San Diego , CA 92093-0322 , USA.
Taras Y Nazarkoa Section of Molecular Biology, Division of Biological Sciences , University California , San Diego , CA 92093-0322 , USA.
Suresh Subramania Section of Molecular Biology, Division of Biological Sciences , University California , San Diego , CA 92093-0322 , USA.
University of California, San Diego · US

Funding

TARGETING OF PROTEINS INTO PEROXISOMESR01DK041737 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AITCHISON, JOHN D., SUBRAMANI, SURESH · 1990 to 2025
$8.4M
Targeting of proteins into peroxisomesR37DK041737 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANI, SURESH · 2004 to 2013
$5.3M
Mechanisms of lipophagy, the selective autophagy of lipid dropletsR35GM119571 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NAZARKO, TARAS Y. · 2016 to 2020
$1.9M
Targeting of Proteins into PeroxisomesR56DK041737 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANI, SURESH · 2014 to 2014
$149k
NIDDK NIH HHS R01 DK041737NIDDK NIH HHS R37 DK041737NIDDK NIH HHS R56 DK041737NIGMS NIH HHS R35 GM119571
6 · The paper itself

Abstract

Macroautophagy/autophagy is a highly conserved process in which subcellular components destined for degradation are sequestered within autophagosomes. The selectivity of autophagy is determined by autophagy receptors, such as Pichia pastoris Atg30 (autophagy-related 30), which controls the selective degradation of peroxisomes (pexophagy) through the assembly of a receptor-protein complex (RPC). Previously, we proved that the peroxisomal acyl-CoA-binding protein, Atg37, and the highly conserved peroxin, Pex3, are required for RPC formation and efficient pexophagy. Here, we describe how Atg37 and Pex3 regulate the assembly and activation of the pexophagic RPC. We demonstrate that Atg30 requires both Atg37 and Pex3 to recruit Atg8 and Atg11 to the pexophagic RPC, because Atg37 depends on Pex3 for its localization at the peroxisomal membrane. We establish that due to close proximity of Atg37- and Pex3-binding sites in the middle domain of Atg30, the binding of these proteins to Atg30 is mutually exclusive within this region. We also show that direct binding of Pex3 and Atg37 to Atg30 regulates its phosphorylation by the Hrr25 kinase, negatively and positively, respectively. Based on these results we present a model that clarifies the assembly and activation of the pexophagic RPC through the phosphoregulation of Atg30.

Indexed as

AutophagyCasein Kinase IHumansLipoproteinsMembrane ProteinsPeroxinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCasein Kinase IHRR25 protein, S cerevisiaeLipoproteinsMembrane ProteinsPeroxinsPex3 protein, humanPEX3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsAtg30Atg37autophagic receptorperoxinperoxisomePex3pexophagyreceptor-protein complexselective autophagy

Identifiers

PMID29260977
PMCPMC5915033
OpenAlexW2779002803

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.