Evidence map›Paper›PMID 29260496›Full record

ArticleInternational ophthalmology2019

Evaluation of CNTNAP2 gene rs2107856 polymorphism in Turkish population with pseudoexfoliation syndrome.

Irmak Karaca, Suzan Guven Yilmaz, Melis Palamar, Huseyin Onay, Bilcag Akgun, Burcu Aytacoglu, Ayca Aykut, Feristah Ferda Ozkinay

Abstract read
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In one paragraph

Article in International ophthalmology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Irmak KaracaDepartment of Ophthalmology, Ege University Faculty of Medicine, 35040, Bornova, Izmir, Turkey.
Suzan Guven YilmazDepartment of Ophthalmology, Ege University Faculty of Medicine, 35040, Bornova, Izmir, Turkey.
Melis PalamarDepartment of Ophthalmology, Ege University Faculty of Medicine, 35040, Bornova, Izmir, Turkey. melispalamar@hotmail.com.ORCID http://orcid.org/0000-0002-2494-0131
Huseyin OnayDepartment of Medical Genetics, Ege University Faculty of Medicine, Izmir, Turkey.
Bilcag AkgunDepartment of Medical Genetics, Ege University Faculty of Medicine, Izmir, Turkey.
Burcu AytacogluDepartment of Statistics, Ege University, Izmir, Turkey.
Ayca AykutDepartment of Medical Genetics, Ege University Faculty of Medicine, Izmir, Turkey.
Feristah Ferda OzkinayDepartment of Medical Genetics, Ege University Faculty of Medicine, Izmir, Turkey.
Ege University · TR

Funding

Scientific Research Foundation of Ege University School of Medicine 2014-TIP-080
6 · The paper itself

Abstract

purposeTo investigate rs2107856 single-nucleotide polymorphism (SNP) of CNTNAP2 gene in Turkish population with pseudoexfoliation and to correlate clinical characteristics with the genotypic profile. MATERIALS AND

methodsForty-three patients with pseudoexfoliation syndrome (PXS), 46 patients with pseudoexfoliation glaucoma (PXG) and 99 healthy controls were enrolled. Comprehensive ophthalmological examination, central corneal thickness measurement and retinal nerve fiber layer thickness analysis of the peripapillary area were performed. Blood samples of 2 mL with EDTA were obtained and sent for genetic analysis. The role of the detected polymorphism on disease tendency along with the genotype and allele frequencies in each group was evaluated.

resultsThe mean age of the groups was 70.0 ± 8.0 (range 51-86) in PXS, 71.2 ± 8.8 (range 51-93) in PXG and 64.6 ± 8.3 (range 51-91) in controls. The percentages of homozygote individuals were 11.6, 10.9, 21.2%, and heterozygote individuals were 41.9, 45.7, 42.4% in patients with PXS, PXG and controls, respectively. There was no statistically significant difference between groups in terms of both genotype and allele frequencies of rs2107856 (p = 0.429 and p = 0.178, respectively). Retinal nerve fiber layer thickness did not differ between SNP-positive and SNP-negative individuals in PXG, and there was no significant difference between genotype and age, sex, best corrected visual acuity, intraocular pressure, central corneal thickness, cup/disk ratio and retinal nerve fiber layer thickness in any of the groups (p > 0.05).

conclusionrs2107856 SNP of CNTNAP2 gene has no association with PXS and PXG in the evaluated Turkish population.

Indexed as

Polymorphism, GeneticAgedAged, 80 and overCross-Sectional StudiesDNAExfoliation SyndromeFemaleGenotypeHumansIncidenceIntraocular PressureMaleMembrane ProteinsMiddle AgedNerve Tissue ProteinsPolymerase Chain ReactionCNTNAP2 protein, humanDNAMembrane ProteinsNerve Tissue ProteinsCNTNAP2 geneGlaucomaPolymorphismPseudoexfoliation

Identifiers

PMID29260496
OpenAlexW2778260538

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.