Evidence map›Paper›PMID 29259235›Full record

ArticleScientific reports2017

Transcriptomic analysis of mitochondrial TFAM depletion changing cell morphology and proliferation.

Woo Rin Lee, Heeju Na, Seon Woo Lee, Won-Jun Lim, Namshin Kim, J Eugene Lee, Changwon Kang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Mitochondrial function meets oncology: the multifaceted role of TFAM across cancer types.Apoptosis : an international journal on programmed cell death · 2026
    Review
  3. Article
  4. Article
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  7. Article
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  9. Article
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  13. Article
  14. Article
  15. Mitochondrial dysfunction, UPRCell & bioscience · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Role of the mitochondrial stress response in human cancer progression.Experimental biology and medicine (Maywood, N.J.) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Woo Rin LeeDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Korea.
Heeju NaDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Korea.
Seon Woo LeeDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Korea.
Won-Jun LimGenome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Korea.
Namshin KimGenome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Korea.ORCID 0000-0001-6361-274X
J Eugene LeeCenter for Bioanalysis, Korea Research Institute of Standards and Science, Daejeon, 34113, Korea. j.eugenelee@gmail.com.
Changwon KangDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Korea. ckang@kaist.ac.kr.ORCID 0000-0002-0867-6385
Korea Advanced Institute of Science and Technology · KRKorea Research Institute of Bioscience and Biotechnology · KRKorea Research Institute of Standards and Science · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human mitochondrial transcription factor A (TFAM) has been implicated in promoting tumor growth and invasion. TFAM activates mitochondrial DNA (mtDNA) transcription, and affects nuclear gene expression through mitochondrial retrograde signaling. In this study, we investigated the effects of TFAM depletion on the morphology and transcriptome of MKN45 gastric cancer cells. Morphology alteration became visible at 12 h after TFAM knockdown: the proportion of growth-arrested polygonal cells versus oval-shaped cells increased, reaching a half-maximum at 24 h and a near-maximum at 36 h. TFAM knockdown upregulated four genes and downregulated six genes by more than threefold at 24 h and similarly at 48 h. Among them, the knockdown of CFAP65 (cilia and flagella associated protein 65) or PCK1 (cytoplasmic phosphoenolpyruvate carboxykinase) rescued the effects of TFAM depletion on cell morphology and proliferation. PCK1 was found to act downstream of CFAP65 in calcium-mediated retrograde signaling. Furthermore, mtDNA depletion by 2',3'-dideoxycytidine was sufficient for induction of CFAP65 and PCK1 expression and inhibition of cell proliferation, but oxidative phosphorylation blockade or mitochondrial membrane potential depolarization was not. Thus, the TFAM-mtDNA-calcium-CFAP65-PCK1 axis participates in mitochondrial retrograde signaling, affecting tumor cell differentiation and proliferation.

Indexed as

Calcium SignalingCell DifferentiationCell Line, TumorCell ProliferationCytoskeletal ProteinsDNA-Binding ProteinsDNA, MitochondrialDown-RegulationGene ExpressionGene Expression ProfilingGene Expression RegulationGene Knockdown TechniquesHumansIntracellular Signaling Peptides and ProteinsMitochondriaMitochondrial ProteinsCytoskeletal ProteinsDNA-Binding ProteinsDNA, MitochondrialIntracellular Signaling Peptides and ProteinsMitochondrial ProteinsTFAM protein, humanTranscription Factors

Identifiers

PMID29259235
PMCPMC5736646
OpenAlexW2774158417

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.