Evidence map›Paper›PMID 29259165›Full record

ArticleNature communications2017

Unravelling the specificity and mechanism of sialic acid recognition by the gut symbiont Ruminococcus gnavus.

C David Owen, Louise E Tailford, Serena Monaco, Tanja Šuligoj, Laura Vaux, Romane Lallement, Zahra Khedri, Hai Yu, Karine Lecointe, John Walshaw and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 87 citations in OpenAlex.

  1. Extensive library ofMicrobiology spectrum · 2026
    Article
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  11. Review
  12. Review
  13. Mucin Glycans: A Target for Cancer Therapy.Molecules (Basel, Switzerland) · 2023
    Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 2 countries.

C David OwenBiomolecular Sciences Building, University of St Andrews, St Andrews, KY16 9ST, UK.
Louise E TailfordThe Gut Health and Food Safety Programme, Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UA, UK.
Serena MonacoSchool of Pharmacy, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
Tanja ŠuligojThe Gut Health and Food Safety Programme, Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UA, UK.
Laura VauxThe Gut Health and Food Safety Programme, Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UA, UK.
Romane LallementThe Gut Health and Food Safety Programme, Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UA, UK.
Zahra KhedriGlycobiology Research and Training Center (GRTC), Departments of Medicine and Cellular and Molecular Medicine, UC San Diego, La Jolla, CA, 92093-0687, USA.
Hai YuDepartment of Chemistry, University of California-Davis, Davis, CA, 95616, USA.
Karine LecointeThe Gut Health and Food Safety Programme, Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UA, UK.
John WalshawThe Gut Health and Food Safety Programme, Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UA, UK.
Sandra TriboloThe Gut Health and Food Safety Programme, Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UA, UK.
Marc HorrexThe Gut Health and Food Safety Programme, Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UA, UK.
Andrew BellThe Gut Health and Food Safety Programme, Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UA, UK.
Xi ChenDepartment of Chemistry, University of California-Davis, Davis, CA, 95616, USA.
Gary L TaylorBiomolecular Sciences Building, University of St Andrews, St Andrews, KY16 9ST, UK.
Ajit VarkiGlycobiology Research and Training Center (GRTC), Departments of Medicine and Cellular and Molecular Medicine, UC San Diego, La Jolla, CA, 92093-0687, USA.ORCID http://orcid.org/0000-0002-2206-975X
Jesus AnguloSchool of Pharmacy, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.ORCID http://orcid.org/0000-0001-7250-5639
Nathalie JugeThe Gut Health and Food Safety Programme, Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UA, UK. nathalie.juge@quadram.ac.uk.
Norwich Research Park · GBUniversity of East Anglia · GBUniversity of California, Davis · USUniversity of California San Diego · USUniversity of St Andrews · GB

Funding

BIOSYNTHESIS AND REGULATION OF SUBSTITUTED SIALIC ACIDSR01GM032373 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VARKI, AJIT P · 1985 to 2022
$6.9M
Oligosaccharides as antimicrobials and prebioticsR01HD065122 · NICHD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CHEN, XI · 2010 to 2013
$1.8M
Biotechnology and Biological Sciences Research Council BB/F016778/1Biotechnology and Biological Sciences Research Council BB/J004529/1Biotechnology and Biological Sciences Research Council BB/P008895/1Biotechnology and Biological Sciences Research Council BBS/E/F/00044452NICHD NIH HHS R01 HD065122NIGMS NIH HHS R01 GM032373
6 · The paper itself

Abstract

Ruminococcus gnavus is a human gut symbiont wherein the ability to degrade mucins is mediated by an intramolecular trans-sialidase (RgNanH). RgNanH comprises a GH33 catalytic domain and a sialic acid-binding carbohydrate-binding module (CBM40). Here we used glycan arrays, STD NMR, X-ray crystallography, mutagenesis and binding assays to determine the structure and function of RgNanH_CBM40 (RgCBM40). RgCBM40 displays the canonical CBM40 β-sandwich fold and broad specificity towards sialoglycans with millimolar binding affinity towards α2,3- or α2,6-sialyllactose. RgCBM40 binds to mucus produced by goblet cells and to purified mucins, providing direct evidence for a CBM40 as a novel bacterial mucus adhesin. Bioinformatics data show that RgCBM40 canonical type domains are widespread among Firmicutes. Furthermore, binding of R. gnavus ATCC 29149 to intestinal mucus is sialic acid mediated. Together, this study reveals novel features of CBMs which may contribute to the biogeography of symbiotic bacteria in the gut.

Indexed as

Adhesins, BacterialAnimalsCatalytic DomainCell LineColonComputational BiologyCrystallography, X-RayGlycoproteinsGoblet CellsHumansLactoseMice, Inbred C57BLMucinsMutagenesis, Site-DirectedN-Acetylneuraminic AcidNeuraminidase6'-sialyllactoseAdhesins, BacterialGlycoproteinsLactoseMucinsN-Acetylneuraminic AcidNeuraminidasetrans-sialidase

Identifiers

PMID29259165
PMCPMC5736709
OpenAlexW2773643620

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.