Evidence map›Paper›PMID 29258872›Full record

ArticleDevelopmental biology2018

Prdm13 is required for Ebf3+ amacrine cell formation in the retina.

Noah B Goodson, Jhenya Nahreini, Grace Randazzo, Ana Uruena, Jane E Johnson, Joseph A Brzezinski

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

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  15. Simultaneous deletion ofDevelopment (Cambridge, England) · 2020
    Article
  16. Article
  17. Transcription factor Ptf1a in development, diseases and reprogramming.Cellular and molecular life sciences : CMLS · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Noah B GoodsonUniversity of Colorado Denver, Department of Ophthalmology, United States; University of Colorado Denver, Neuroscience Graduate Program, United States.
Jhenya NahreiniUniversity of Colorado Denver, Department of Ophthalmology, United States.
Grace RandazzoUniversity of Colorado Denver, Department of Ophthalmology, United States.
Ana UruenaUniversity of Texas Southwestern Medical Center, Department of Neuroscience, United States.
Jane E JohnsonUniversity of Texas Southwestern Medical Center, Department of Neuroscience, United States.
Joseph A BrzezinskiUniversity of Colorado Denver, Department of Ophthalmology, United States. Electronic address: joseph.brzezinski@ucdenver.edu.
University of Colorado Denver · USThe University of Texas Southwestern Medical Center · USUniversity of Denver · US

Funding

Mechanisms of cell fate specification and competence regulation in photoreceptorsR01EY024272 · NEI · UNIVERSITY OF COLORADO DENVER · PI Joseph A Brzezinski · 2014 to 2026
$5.3M
BHLH TRANSCRIPTION FACTORS IN NEURAL DEVELOPMENTR01HD037932 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI JOHNSON, JANE E · 2000 to 2015
$4.9M
Transcription Factor Control of Neuronal DiversityR37HD091856 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI Jane E Johnson · 2017 to 2026
$4.7M
NEI NIH HHS R01 EY024272NICHD NIH HHS R01 HD037932NICHD NIH HHS R37 HD091856
6 · The paper itself

Abstract

Amacrine interneurons play a critical role in the processing of visual signals within the retina. They are highly diverse, representing 30 or more distinct subtypes. Little is known about how amacrine subtypes acquire their unique gene expression and morphological features. We characterized the gene expression pattern of the zinc-finger transcription factor Prdm13 in the mouse. Consistent with a developmental role, Prdm13 was expressed by Ptf1a+ amacrine and horizontal precursors. Over time, Prdm13 expression diverged from the transiently expressed Ptf1a and marked just a subset of amacrine cells in the adult retina. While heterogeneous, we show that most of these Prdm13+ amacrine cells express the transcription factor Ebf3 and the calcium binding protein calretinin. Loss of Prdm13 did not affect the number of amacrine cells formed during development. However, we observed a modest loss of amacrine cells and increased apoptosis that correlated with the onset timing of Ebf3 expression. Adult Prdm13 loss-of-function mice had 25% fewer amacrine cells, altered calretinin expression, and a lack of Ebf3+ amacrines. Forcing Prdm13 expression in retinal progenitor cells did not significantly increase amacrine cell formation, Ebf3 or calretinin expression, and appeared detrimental to the survival of photoreceptors. Our data show that Prdm13 is not required for amacrine fate as a class, but is essential for the formation of Ebf3+ amacrine cell subtypes. Rather than driving subtype identity, Prdm13 may act by restricting competing fate programs to maintain identity and survival.

Indexed as

Amacrine CellsAnimalsApoptosisCalbindin 2Cell SurvivalGene Expression Regulation, DevelopmentalHistone-Lysine N-MethyltransferaseMiceMice, TransgenicStem CellsTranscription FactorsCalb2 protein, mouseCalbindin 2Ebf3 protein, mouseHistone-Lysine N-MethyltransferasePrdm13 protein, mouseTranscription FactorsAmacrineCalretininEbf3Inner plexiform layerPrdm13Retinal development

Identifiers

PMID29258872
PMCPMC5785448
OpenAlexW2774151205

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.