Evidence map›Paper›PMID 29258816›Full record

ArticleJournal of molecular biology2018

The Y. bercovieri Anbu crystal structure sheds light on the evolution of highly (pseudo)symmetric multimers.

Anna Piasecka, Honorata Czapinska, Marie-Theres Vielberg, Roman H Szczepanowski, Reiner Kiefersauer, Simon Reed, Michael Groll, Matthias Bochtler

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Anna PiaseckaPolish Academy of Sciences, Institute of Biochemistry and Biophysics, Warsaw, Poland; School of Medicine, Cardiff University, Cardiff, United Kingdom.
Honorata CzapinskaPolish Academy of Sciences, Institute of Biochemistry and Biophysics, Warsaw, Poland; International Institute of Molecular and Cell Biology, Warsaw, Poland.
Marie-Theres VielbergCenter for Integrated Protein Science at the Department Chemie, Lehrstuhl für Biochemie, Technische Universität München, Garching, Germany.
Roman H SzczepanowskiInternational Institute of Molecular and Cell Biology, Warsaw, Poland.
Reiner KiefersauerProteros biostructures GmbH, Martinsried, Germany.
Simon ReedSchool of Medicine, Cardiff University, Cardiff, United Kingdom.
Michael GrollCenter for Integrated Protein Science at the Department Chemie, Lehrstuhl für Biochemie, Technische Universität München, Garching, Germany.
Matthias BochtlerPolish Academy of Sciences, Institute of Biochemistry and Biophysics, Warsaw, Poland; International Institute of Molecular and Cell Biology, Warsaw, Poland; Schools of Chemistry and Biosciences, Cardiff University, Cardiff, United Kingdom. Electronic address: mbochtler@iimcb.gov.pl.
International Institute of Molecular and Cell Biology · PLCardiff University · GBCenter for Integrated Protein Science Munich · DE

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
WORKSHOPS AND TRAININGP41RR017573 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI CARRAGHER, BRIDGET OLIVIA · 2002 to 2011
$14.2M
A Helical Crystallization Pipeline for Membrane Protein Structure by TEMR01GM095573 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI CARRAGHER, BRIDGET OLIVIA · 2010 to 2013
$1.6M
NCRR NIH HHS P41 RR017573NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM095573
6 · The paper itself

Abstract

Ancestral β-subunit (Anbu) is homologous to HslV and 20S proteasomes. Based on its phylogenetic distribution and sequence clustering, Anbu has been proposed as the "ancestral" form of proteasomes. Here, we report biochemical data, small-angle X-ray scattering results, negative-stain electron microscopy micrographs and a crystal structure of the Anbu particle from Yersinia bercovieri (YbAnbu). All data are consistent with YbAnbu forming defined 12-14 subunit multimers that differ in shape from both HslV and 20S proteasomes. The crystal structure reveals that YbAnbu subunits form tight dimers, held together in part by the Anbu specific C-terminal helices. These dimers ("protomers") further assemble into a low-rise left-handed staircase. The lock-washer shape of YbAnbu is consistent with the presence of defined multimers, X-ray diffraction data in solution and negative-stain electron microscopy images. The presented structure suggests a possible evolutionary pathway from helical filaments to highly symmetric or pseudosymmetric multimer structures. YbAnbu subunits have the Ntn-hydrolase fold, a putative S

Indexed as

Bacterial ProteinsCrystallography, X-RayEvolution, MolecularModels, MolecularOperonPhylogenyProteasome Endopeptidase ComplexProtein ConformationProtein Interaction Domains and MotifsProtein MultimerizationProtein SubunitsScattering, RadiationX-Ray DiffractionYersiniaBacterial ProteinsProteasome Endopeptidase ComplexProtein SubunitsAnbuHslVLock-washerProteasomeStructure

Identifiers

PMID29258816
PMCPMC6376114
OpenAlexW2775220904

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.