ArticleBMC genomics2017
Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.).
Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 24 citations in OpenAlex.
- Genome-wide cyclin gene evolution in Arabidopsis and Brassica reveals polyploidization-driven duplication and flowering-time associations.Molecular genetics and genomics : MGG · 2026Article
- Genome-Wide Analysis of the lncRNAs and miRNAs Involved in Flower Development in Radish.Plant direct · 2026Article
- Genetic Mechanisms for Hybrid Breeding in Vegetable Crops.Plants (Basel, Switzerland) · 2023Review
- Genomewide Identification and Characterization of the Genes Involved in the Flowering of Cotton.International journal of molecular sciences · 2022Article
- Crosstalk between auxin and gibberellin during stalk elongation in flowering Chinese cabbage.Scientific reports · 2021Article
- Genome-Wide Association Study and Post-genome-Wide Association Study Analysis for Spike Fertility and Yield Related Traits in Bread Wheat.Frontiers in plant science · 2021Article
- Genome Triplication Leads to Transcriptional Divergence ofFrontiers in plant science · 2020Review
- Article
- The role of FRIGIDA and FLOWERING LOCUS C genes in flowering time of Brassica rapa leafy vegetables.Scientific reports · 2019Article
- Transcriptome sequencing assisted discovery and computational analysis of novel SNPs associated with flowering inHorticulture research · 2019Article
- Genome-Wide Identification of Flowering-Time Genes inInternational journal of molecular sciences · 2018Article
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Authors and funding
10 authors at 2 institutions in 1 country.
Funding
Abstract
backgroundRadish (Raphanus sativus L.) belongs to the family Brassicaceae, and is an economically important root crop grown worldwide. Flowering is necessary for plant propagation, but it is also an important agronomic trait influencing R. sativus fleshy taproot yield and quality in the case of an imbalance between vegetative and reproductive growth. There is currently a lack of detailed information regarding the pathways regulating the flowering genes or their evolution in R. sativus. The release of the R. sativus genome sequence provides an opportunity to identify and characterize the flowering genes using a comparative genomics approach.
resultsWe identified 254 R. sativus flowering genes based on sequence similarities and analyses of syntenic regions. The genes were unevenly distributed on the various chromosomes. Furthermore, we discovered the existence of R. sativus core function genes in the flowering regulatory network, which revealed that basic flowering pathways are relatively conserved between Arabidopsis thaliana and R. sativus. Additional comparisons with Brassica oleracea and Brassica rapa indicated that the retained flowering genes differed among species after genome triplication events. The R. sativus flowering genes were preferentially retained, especially those associated with gibberellin signaling and metabolism. Moreover, analyses of selection pressures suggested that the genes in vernalization and autonomous pathways were more variable than the genes in other R. sativus flowering pathways.
conclusionsOur results revealed that the core flowering genes are conserved between R. sativus and A. thaliana to a certain extent. Moreover, the copy number variation and functional differentiation of the homologous genes in R. sativus increased the complexity of the flowering regulatory networks after genome polyploidization. Our study provides an integrated framework for the R. sativus flowering pathways and insights into the evolutionary relationships between R. sativus flowering genes and the genes from A. thaliana and close relatives.
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