Evidence map›Paper›PMID 29257137›Full record

ArticleScientific data2017

Ash leaf metabolomes reveal differences between trees tolerant and susceptible to ash dieback disease.

Christine M Sambles, Deborah L Salmon, Hannah Florance, Thomas P Howard, Nicholas Smirnoff, Lene R Nielsen, Lea V McKinney, Erik D Kjær, Richard J A Buggs, David J Studholme and 1 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Early-Stage Growth Restriction ofMicroorganisms · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. The Road to Resistance in Forest Trees.Frontiers in plant science · 2019
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Christine M SamblesBiosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK.ORCID 0000-0002-7219-0398
Deborah L SalmonBiosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK.
Hannah FloranceSynthSys, Roger Land Building, Alexander Crum Brown Road, The King's Buildings, Edinburgh EH9 3FF, UK.
Thomas P HowardSchool of Biology, Devonshire Building, Newcastle University, Newcastle upon, Tyne NE1 7RU, UK.
Nicholas SmirnoffBiosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK.ORCID 0000-0001-5630-5602
Lene R NielsenDepartment of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, Frederiksberg C 1958, Denmark.ORCID 0000-0002-7214-8691
Lea V McKinneyDepartment of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, Frederiksberg C 1958, Denmark.
Erik D KjærDepartment of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, Frederiksberg C 1958, Denmark.ORCID 0000-0001-8624-1611
Richard J A BuggsRoyal Botanic Gardens Kew, Richmond, Surrey TW9 3AB, UK.
David J StudholmeBiosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK.ORCID 0000-0002-3010-6637
Murray GrantSchool of Life Sciences, Gibbet Hill Campus, University of Warwick, Coventry CV4 7AL, UK.

Funding

Biotechnology and Biological Sciences Research Council BB/F011652/1Biotechnology and Biological Sciences Research Council BB/L012162/1Biotechnology and Biological Sciences Research Council BBS/E/J/000CA523
6 · The paper itself

Abstract

European common ash, Fraxinus excelsior, is currently threatened by Ash dieback (ADB) caused by the fungus, Hymenoscyphus fraxineus. To detect and identify metabolites that may be products of pathways important in contributing to resistance against H. fraxineus, we performed untargeted metabolomic profiling on leaves from five high-susceptibility and five low-susceptibility F. excelsior individuals identified during Danish field trials. We describe in this study, two datasets. The first is untargeted LC-MS metabolomics raw data from ash leaves with high-susceptibility and low-susceptibility to ADB in positive and negative mode. These data allow the application of peak picking, alignment, gap-filling and retention-time correlation analyses to be performed in alternative ways. The second, a processed dataset containing abundances of aligned features across all samples enables further mining of the data. Here we illustrate the utility of this dataset which has previously been used to identify putative iridoid glycosides, well known anti-herbivory terpenoid derivatives, and show differential abundance in tolerant and susceptible ash samples.

Indexed as

FraxinusMetabolomePlant DiseasesPlant Leaves

Identifiers

PMID29257137
PMCPMC5735976

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.