Evidence map›Paper›PMID 29256171›Full record

ArticleJournal of cell communication and signaling2018

Multiple enhancer regions govern the transcription of CCN2 during embryonic development.

Stephanie L Frost, Ke Liu, Ian M H Li, Blandine Poulet, Eithne Comerford, Sarah De Val, George Bou-Gharios

Open access · hybridAbstract read
In one paragraph

Article in Journal of cell communication and signaling, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Cartilage-Specific Cre Recombinase Transgenes/Alleles in the Mouse.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Stephanie L FrostInstitute of Ageing and Chronic Disease, William Henry Duncan Building, University of Liverpool, West Derby Street, Liverpool, L7 8TX, UK.
Ke LiuInstitute of Ageing and Chronic Disease, William Henry Duncan Building, University of Liverpool, West Derby Street, Liverpool, L7 8TX, UK.
Ian M H LiInstitute of Ageing and Chronic Disease, William Henry Duncan Building, University of Liverpool, West Derby Street, Liverpool, L7 8TX, UK.
Blandine PouletInstitute of Ageing and Chronic Disease, William Henry Duncan Building, University of Liverpool, West Derby Street, Liverpool, L7 8TX, UK.
Eithne ComerfordInstitute of Ageing and Chronic Disease, William Henry Duncan Building, University of Liverpool, West Derby Street, Liverpool, L7 8TX, UK.
Sarah De ValLudwig Institute for Cancer Research, Oxford University, Old Road Campus, Research Building, Headington, Oxford, OX3 7DQ, UK.
George Bou-GhariosInstitute of Ageing and Chronic Disease, William Henry Duncan Building, University of Liverpool, West Derby Street, Liverpool, L7 8TX, UK. ggharios@liverpool.ac.uk.ORCID http://orcid.org/0000-0002-9563-9418
University of Liverpool · GBUniversity of Oxford · GB

Funding

Medical Research Council MR/P020941/1Versus Arthritis 20859
6 · The paper itself

Abstract

CCN2 is a critical matricellular protein that is expressed in several cells with major implications in physiology and different pathologies. However, the transcriptional regulation of this gene remains obscure. We used the Encyclopaedia of DNA Elements browser (ENCODE) to visualise the region spanning from 300 kb upstream to the CCN2 start site in silico in order to identify enhancer regions that regulate transcription of this gene. Selection was based on three criteria associated with enhancer regions: 1) H3K4me1 and H3K27ac histone modifications, 2) DNase I hypersensitivity of chromatin and 3) inter-species conservation. Reporter constructs were created with sequences spanning each of the regions of interest placed upstream of an Hsp68 silent proximal promoter sequence in order to drive the expression of β-galactosidase transgene. Each of these constructs was subsequently used to create transgenic mice in which reporter gene production was assessed at the E15.5 developmental stage. Four functional enhancers were identified, with each driving distinct, tissue-specific patterns of transgene expression. An enhancer located -100 kb from the CCN2 transcription start site facilitated expression within vascular tissue. An enhancer -135 kb upstream of CCN2 drove expression within the articular chondrocytes of synovial joints. The other two enhancers, located at -198 kb and -229 kb, mediated transgene expression within dermal fibroblasts, however the most prevalent activity was found within hypertrophic chondrocytes and periosteal tissue, respectively. These findings suggest that the global expression of CCN2 during development results from the activity of several tissue-specific enhancer regions in addition to proximal regulatory elements that have previously been demonstrated to drive transcription of the gene during development.

Indexed as

CCN2DevelopmentEnhancerTranscription

Identifiers

PMID29256171
PMCPMC5842200
OpenAlexW2777713916

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.