Evidence map›Paper›PMID 29256075›Full record

ArticleAnalytical and bioanalytical chemistry2018

Two complementary reversed-phase separations for comprehensive coverage of the semipolar and nonpolar metabolome.

Fuad J Naser, Nathaniel G Mahieu, Lingjue Wang, Jonathan L Spalding, Stephen L Johnson, Gary J Patti

Abstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Trial
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  4. Article
  5. Review
  6. Article
  7. Article
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  12. Liquid Chromatography-Mass Spectrometry for Clinical Metabolomics: An Overview.Advances in experimental medicine and biology · 2021
    Article
  13. Article
  14. Article
  15. Chemical Discovery in the Era of Metabolomics.Journal of the American Chemical Society · 2020
    Review
  16. A Protocol to Compare Methods for Untargeted Metabolomics.Methods in molecular biology (Clifton, N.J.) · 2019
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Fuad J NaserDepartment of Chemistry, Washington University in St. Louis, 1 Brookings Dr, St. Louis, MO, 63130, USA.
Nathaniel G MahieuDepartment of Chemistry, Washington University in St. Louis, 1 Brookings Dr, St. Louis, MO, 63130, USA.
Lingjue WangDepartment of Chemistry, Washington University in St. Louis, 1 Brookings Dr, St. Louis, MO, 63130, USA.
Jonathan L SpaldingDepartment of Genetics, Washington University in St. Louis, 4515 McKinley Ave, St. Louis, MO, 63130, USA.
Stephen L JohnsonDepartment of Genetics, Washington University in St. Louis, 4515 McKinley Ave, St. Louis, MO, 63130, USA.
Gary J PattiDepartment of Chemistry, Washington University in St. Louis, 1 Brookings Dr, St. Louis, MO, 63130, USA. gjpattij@wustl.edu.

Funding

TRAINING PROGRAM IN CELLULAR AND MOLECULAR BIOLOGYT32GM007067 · NIGMS · WASHINGTON UNIVERSITY · PI TRUE-KROB, HEATHER L · 1985 to 2020
$20.4M
Developing Metabolomic Technologies to Advance Environmental Exposure AnalysisR35ES028365 · NIEHS · WASHINGTON UNIVERSITY · PI PATTI, GARY J · 2017 to 2024
$5.9M
DEVELOPING THE UNTARGETED METABOLOMIC WORKFLOW FOR HIGH-THROUGHPUT ANALYSESR01ES022181 · NIEHS · WASHINGTON UNIVERSITY · PI PATTI, GARY J · 2012 to 2016
$1.8M
CELL-SPECIFIC ISOTOPE LABELING TO TRACK INTERCELLULAR METABOLITE EXCHANGE IN CANCERR21CA191097 · NCI · WASHINGTON UNIVERSITY · PI PATTI, GARY J · 2015 to 2017
$663k
NCI NIH HHS R21 CA191097NIEHS NIH HHS R01 ES022181NIEHS NIH HHS R35 ES028365NIGMS NIH HHS T32 GM007067
6 · The paper itself

Abstract

Although it is common in untargeted metabolomics to apply reversed-phase liquid chromatography (RPLC) and hydrophilic interaction liquid chromatography (HILIC) methods that have been systematically optimized for lipids and central carbon metabolites, here we show that these established protocols provide poor coverage of semipolar metabolites because of inadequate retention. Our objective was to develop an RPLC approach that improved detection of these metabolites without sacrificing lipid coverage. We initially evaluated columns recently released by Waters under the CORTECS line by analyzing 47 small-molecule standards that evenly span the nonpolar and semipolar ranges. An RPLC method commonly used in untargeted metabolomics was considered a benchmarking reference. We found that highly nonpolar and semipolar metabolites cannot be reliably profiled with any single method because of retention and solubility limitations of the injection solvent. Instead, we optimized a multiplexed approach using the CORTECS T3 column to analyze semipolar compounds and the CORTECS C

Indexed as

MetabolomeChromatography, Reverse-PhaseEscherichia coliHydrophobic and Hydrophilic InteractionsMass SpectrometryReference StandardsSolubilityGlobal coverageMass spectrometryMetabolomicsReversed-phaseSemipolar metabolomeUntargeted profiling

Identifiers

PMID29256075
PMCPMC5776055

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.