Evidence map›Paper›PMID 29255294›Full record

ArticleNature communications2017

PAX7 target genes are globally repressed in facioscapulohumeral muscular dystrophy skeletal muscle.

Christopher R S Banerji, Maryna Panamarova, Husam Hebaishi, Robert B White, Frédéric Relaix, Simone Severini, Peter S Zammit

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed, 3 pooled it
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 3 syntheses or guidelines pooled it, 111 citations in OpenAlex.

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  8. Hemizygous mutation ofAmerican journal of physiology. Cell physiology · 2025
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 5 countries.

Christopher R S BanerjiRandall Centre of Cell and Molecular Biophysics, New Hunt's House, King's College London, Guy's Campus, London, SE1 1UL, UK. christopher.banerji15@imperial.ac.uk.
Maryna PanamarovaRandall Centre of Cell and Molecular Biophysics, New Hunt's House, King's College London, Guy's Campus, London, SE1 1UL, UK.
Husam HebaishiRandall Centre of Cell and Molecular Biophysics, New Hunt's House, King's College London, Guy's Campus, London, SE1 1UL, UK.
Robert B WhiteRandall Centre of Cell and Molecular Biophysics, New Hunt's House, King's College London, Guy's Campus, London, SE1 1UL, UK.ORCID http://orcid.org/0000-0002-2854-0936
Frédéric RelaixParis Est-Creteil University, IMRB U955, Faculté de médecine 8 rue du Général Sarrail, 94000, Créteil, France.
Simone SeveriniDepartment of Computer Science, University College London, London, WC1E 6BT, UK.
Peter S ZammitRandall Centre of Cell and Molecular Biophysics, New Hunt's House, King's College London, Guy's Campus, London, SE1 1UL, UK. peter.zammit@kcl.ac.uk.ORCID http://orcid.org/0000-0001-9562-3072
King's College London · GBShanghai Jiao Tong University · CNSt Christopher's Hospice · GBThe University of Western Australia · AUUniversité Paris-Est Créteil · FR

Funding

British Heart Foundation PG/13/1930059Medical Research Council MR/P023215/1Wellcome TrustWellcome Trust 085137/Z/08/Z
6 · The paper itself

Abstract

Facioscapulohumeral muscular dystrophy (FSHD) is a prevalent, incurable myopathy, linked to hypomethylation of D4Z4 repeats on chromosome 4q causing expression of the DUX4 transcription factor. However, DUX4 is difficult to detect in FSHD muscle biopsies and it is debatable how robust changes in DUX4 target gene expression are as an FSHD biomarker. PAX7 is a master regulator of myogenesis that rescues DUX4-mediated apoptosis. Here, we show that suppression of PAX7 target genes is a hallmark of FSHD, and that it is as major a signature of FSHD muscle as DUX4 target gene expression. This is shown using meta-analysis of over six FSHD muscle biopsy gene expression studies, and validated by RNA-sequencing on FSHD patient-derived myoblasts. DUX4 also inhibits PAX7 from activating its transcriptional target genes and vice versa. Furthermore, PAX7 target gene repression can explain oxidative stress sensitivity and epigenetic changes in FSHD. Thus, PAX7 target gene repression is a hallmark of FSHD that should be considered in the investigation of FSHD pathology and therapy.

Indexed as

Gene Expression ProfilingGene Expression RegulationAnimalsCells, CulturedHEK293 CellsHomeodomain ProteinsHumansMeta-Analysis as TopicMiceMuscle, SkeletalMuscular Dystrophy, FacioscapulohumeralMyoblastsNIH 3T3 CellsPAX7 Transcription FactorSequence Analysis, RNADUX4L1 protein, humanHomeodomain ProteinsPAX7 protein, humanPAX7 Transcription Factor

Identifiers

PMID29255294
PMCPMC5735185
OpenAlexW2773142236

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.