Evidence map›Paper›PMID 29255161›Full record

ArticleScientific reports2017

Functional characterization of the circadian clock in the Antarctic krill, Euphausia superba.

Alberto Biscontin, Thomas Wallach, Gabriele Sales, Astrid Grudziecki, Leonard Janke, Elena Sartori, Cristiano Bertolucci, Gabriella Mazzotta, Cristiano De Pittà, Bettina Meyer and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  16. Differential Impacts of the Head onFrontiers in physiology · 2019
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  17. Frontiers in physiology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Alberto BiscontinCharité-Universitätsmedizin Berlin, Laboratory of Chronobiology, D-10117, Berlin, Germany.
Thomas WallachCharité-Universitätsmedizin Berlin, Laboratory of Chronobiology, D-10117, Berlin, Germany.
Gabriele SalesDepartment of Biology, University of Padova, 35121, Padova, Italy.
Astrid GrudzieckiCharité-Universitätsmedizin Berlin, Laboratory of Chronobiology, D-10117, Berlin, Germany.
Leonard JankeCharité-Universitätsmedizin Berlin, Laboratory of Chronobiology, D-10117, Berlin, Germany.
Elena SartoriDepartment of Biology, University of Padova, 35121, Padova, Italy.
Cristiano BertolucciDepartment of Life Sciences and Biotechnology, University of Ferrara, 44121, Ferrara, Italy.
Gabriella MazzottaDepartment of Biology, University of Padova, 35121, Padova, Italy.
Cristiano De PittàDepartment of Biology, University of Padova, 35121, Padova, Italy.
Bettina MeyerAlfred Wegener Polar Biological Oceanography, 27570, Bremerhaven, Germany.
Achim KramerCharité-Universitätsmedizin Berlin, Laboratory of Chronobiology, D-10117, Berlin, Germany. achim.kramer@charite.de.
Rodolfo CostaDepartment of Biology, University of Padova, 35121, Padova, Italy. rodolfo.costa@unipd.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antarctic krill (Euphausia superba) is a key species in Southern Ocean ecosystem where it plays a central role in the Antarctic food web. Available information supports the existence of an endogenous timing system in krill enabling it to synchronize metabolism and behavior with an environment characterized by extreme seasonal changes in terms of day length, food availability, and surface ice extent. A screening of our transcriptome database "KrillDB" allowed us to identify the putative orthologues of 20 circadian clock components. Mapping of conserved domains and phylogenetic analyses strongly supported annotations of the identified sequences. Luciferase assays and co-immunoprecipitation experiments allowed us to define the role of the main clock components. Our findings provide an overall picture of the molecular mechanisms underlying the functioning of the endogenous circadian clock in the Antarctic krill and shed light on their evolution throughout crustaceans speciation. Interestingly, the core clock machinery shows both mammalian and insect features that presumably contribute to an evolutionary strategy to cope with polar environment's challenges. Moreover, despite the extreme variability characterizing the Antarctic seasonal day length, the conserved light mediated degradation of the photoreceptor EsCRY1 suggests a persisting pivotal role of light as a Zeitgeber.

Indexed as

AnimalsAntarctic RegionsCircadian ClocksEcosystemEuphausiaceaPhylogenySeasonsTranscriptome

Identifiers

PMID29255161
PMCPMC5735174

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.