ArticlePloS one2017
Rapid identification of candidate genes for resistance to tomato late blight disease using next-generation sequencing technologies.
Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Article
- Identification and mapping of late blight resistance QTLs in the wild tomato accession PI 224710 (Molecular breeding : new strategies in plant improvement · 2024Article
- Identification and mapping of QTLs for late blight resistance in the wild tomato (Frontiers in plant science · 2024Article
- Development of SNP markers linked to purple blotch resistance for marker-assisted selection in onion (3 Biotech · 2023Article
- Transcriptome-Assisted SNP Marker Discovery forInternational journal of molecular sciences · 2023Article
- Next-Generation Sequencing of Local Romanian Tomato Varieties and Bioinformatics Analysis of theInternational journal of molecular sciences · 2022Article
- Leaf Extracts from Resistant Wild Tomato Can Be Used to Control Late Blight (Plants (Basel, Switzerland) · 2022Article
- Identification of QTLs for root color and carotenoid contents in Japanese orange carrot FScientific reports · 2022Article
- Genome-wide characterization of theFrontiers in genetics · 2022Article
- Draft genome sequence of the pulse crop blackgram [Vigna mungo (L.) Hepper] reveals potential R-genes.Scientific reports · 2021Article
- Development of PCR-based DNA marker for detection of white carrot contamination caused byBreeding science · 2021Article
- Comparative transcriptome analysis ofPeerJ · 2021Article
- Peptide Extracts from Seven Medicinal Plants Discovered to Inhibit OomycetePlants (Basel, Switzerland) · 2020Article
- Understanding the Plant-microbe Interactions in CRISPR/CAS9 Era: Indeed a Sprinting Start in Marathon.Current genomics · 2020Review
- Article
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6 authors.
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Abstract
Tomato late blight caused by Phytophthora infestans (Mont.) de Bary, also known as the Irish famine pathogen, is one of the most destructive plant diseases. Wild relatives of tomato possess useful resistance genes against this disease, and could therefore be used in breeding to improve cultivated varieties. In the genome of a wild relative of tomato, Solanum habrochaites accession LA1777, we identified a new quantitative trait locus for resistance against blight caused by an aggressive Egyptian isolate of P. infestans. Using double-digest restriction site-associated DNA sequencing (ddRAD-Seq) technology, we determined 6,514 genome-wide SNP genotypes of an F2 population derived from an interspecific cross. Subsequent association analysis of genotypes and phenotypes of the mapping population revealed that a 6.8 Mb genome region on chromosome 6 was a candidate locus for disease resistance. Whole-genome resequencing analysis revealed that 298 genes in this region potentially had functional differences between the parental lines. Among of them, two genes with missense mutations, Solyc06g071810.1 and Solyc06g083640.3, were considered to be potential candidates for disease resistance. SNP and SSR markers linking to this region can be used in marker-assisted selection in future breeding programs for late blight disease, including introgression of new genetic loci from wild species. In addition, the approach developed in this study provides a model for identification of other genes for attractive agronomical traits.
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