Evidence map›Paper›PMID 29253195›Full record

ArticleNucleic acids research2018

TopA, the Sulfolobus solfataricus topoisomerase III, is a decatenase.

Anna H Bizard, Xi Yang, Hélène Débat, Jonathan M Fogg, Lynn Zechiedrich, Terence R Strick, Florence Garnier, Marc Nadal

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Archaea: A Gold Mine for Topoisomerase Diversity.Frontiers in microbiology · 2021
    Review
  11. Mechanism of Type IA Topoisomerases.Molecules (Basel, Switzerland) · 2020
    Review
  12. The many lives of type IA topoisomerases.The Journal of biological chemistry · 2020
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Anna H BizardUniversité Versailles St-Quentin, Institut de Génétique et Microbiologie, UMR 8621 CNRS-Université Paris-Sud, 91405 Orsay Cedex, France.
Xi YangUniv Paris Diderot, Sorbonne Paris Cité, Institut Jacques Monod, UMR 7592 CNRS, 75013 Paris, France.
Hélène DébatProgramme Equipes Labellisées, Ligue Contre le Cancer, 75013 Paris, France.
Jonathan M FoggDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, One Baylor Plaza, MS: BCM-280, Houston, TX 77030, USA.
Lynn ZechiedrichDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, One Baylor Plaza, MS: BCM-280, Houston, TX 77030, USA.
Terence R StrickUniv Paris Diderot, Sorbonne Paris Cité, Institut Jacques Monod, UMR 7592 CNRS, 75013 Paris, France.
Florence GarnierProgramme Equipes Labellisées, Ligue Contre le Cancer, 75013 Paris, France.
Marc NadalUniv Paris Diderot, Sorbonne Paris Cité, Institut Jacques Monod, UMR 7592 CNRS, 75013 Paris, France.
Centre National de la Recherche Scientifique · FRBaylor College of Medicine · USUniversité Paris-Sud · FR

Funding

S2: Molecular Mechanisms Underlying Fluoroquinolone Susceptibility and ResistanceR01GM115501 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI ZECHIEDRICH, LYNN · 2015 to 2018
$1.7M
Combatting Antimicrobial ResistanceR56AI054830 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI ZECHIEDRICH, LYNN · 2014 to 2014
$394k
NIAID NIH HHS R56 AI054830NIGMS NIH HHS R01 GM115501
6 · The paper itself

Abstract

DNA topoisomerases are essential enzymes involved in all the DNA processes and among them, type IA topoisomerases emerged as a key actor in the maintenance of genome stability. The hyperthermophilic archaeon, Sulfolobus solfataricus, contains three topoisomerases IA including one classical named TopA. SsoTopA is very efficient at unlinking DNA catenanes, grouping SsoTopA into the topoisomerase III family. SsoTopA is active over a wide range of temperatures and at temperatures of up to 85°C it produces highly unwound DNA. At higher temperatures, SsoTopA unlinks the two DNA strands. Thus depending on the temperature, SsoTopA is able to either prevent or favor DNA melting. While canonical topoisomerases III require a single-stranded DNA region or a nick in one of the circles to decatenate them, we show for the first time that a type I topoisomerase, SsoTopA, is able to efficiently unlink covalently closed catenanes, with no additional partners. By using single molecule experiments we demonstrate that SsoTopA requires the presence of a short single-stranded DNA region to be efficient. The unexpected decatenation property of SsoTopA probably comes from its high ability to capture this unwound region. This points out a possible role of TopA in S. solfataricus as a decatenase in Sulfolobus.

Indexed as

Archaeal ProteinsBase SequenceDNA, ArchaealDNA, CatenatedDNA, ConcatenatedDNA, Single-StrandedDNA Topoisomerases, Type IHot TemperatureKineticsModels, MolecularNucleic Acid ConformationSulfolobus solfataricusArchaeal ProteinsDNA, ArchaealDNA, CatenatedDNA, ConcatenatedDNA, Single-StrandedDNA Topoisomerases, Type I

Identifiers

PMID29253195
PMCPMC5778498
OpenAlexW2771528790

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.