Evidence map›Paper›PMID 29253022›Full record

ArticlePloS one2017

Identification of ᴅ-amino acid-containing peptides in human serum.

Seongmin Ha, Ingu Kim, Takumi Takata, Tadatoshi Kinouchi, Masaharu Isoyama, Minoru Suzuki, Noriko Fujii

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
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  9. Site-specific rapid deamidation and isomerization in human lens αA-crystallin in vitro.Protein science : a publication of the Protein Society · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Seongmin HaGraduate School of Science, Kyoto University, Kyoto, Japan.
Ingu KimResearch Reactor Institute, Kyoto University, Osaka, Japan.
Takumi TakataResearch Reactor Institute, Kyoto University, Osaka, Japan.
Tadatoshi KinouchiGraduate School of Science, Kyoto University, Kyoto, Japan.
Masaharu IsoyamaProtein Research Foundation, Osaka, Japan.
Minoru SuzukiResearch Reactor Institute, Kyoto University, Osaka, Japan.
Noriko FujiiResearch Reactor Institute, Kyoto University, Osaka, Japan.ORCID http://orcid.org/0000-0002-4009-342X
Kyoto University Research Reactor Institute · JPKyoto University · JPProtein Research Foundation · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biologically uncommon d-aspartate (d-Asp) residues have been shown to accumulate in proteins associated with age-related human disorders, such as cataract and Alzheimer disease. Such d-Asp-containing proteins are unlikely to be broken down completely because metabolic enzymes recognize only proteins or peptides composed exclusively of l-amino acids. Therefore, undigested d-Asp-containing peptides may exist in blood and, if detectable, may be a useful biomarker for associated diseases. In this study, we investigated d-amino acid-containing peptides in adult human serum by a qualitative d-amino acid analysis based on a diastereomer method and LC-MS/MS method. As a result, two d-Asp-containing peptides were detected in serum, both derived from the fibrinogen β-chain, a glycoprotein that helps in the formation of blood clots. One of the peptides was fibrinopeptide B, which prevents fibrinogen from forming polymers of fibrin, and the other was same peptide with C-terminal Arginine missing. To our knowledge, this is the first report of the presence of d-amino acid-containing peptides in serum and the approach described will provide a new direction on the serum proteome and fragmentome.

Indexed as

AdultAlzheimer DiseaseAmino AcidsAspartic AcidBiomarkersCataractChromatography, LiquidCrystallinsFibrinogenFibrinopeptide BHumansMiddle AgedPeptidesProteomicsTandem Mass SpectrometryYoung AdultAmino AcidsAspartic AcidBiomarkersCrystallinsFibrinogenFibrinopeptide BPeptides

Identifiers

PMID29253022
PMCPMC5734745
OpenAlexW2776184602

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.