Evidence map›Paper›PMID 29251720›Full record

ArticleNature chemical biology2018

Pharmacological perturbation of CDK9 using selective CDK9 inhibition or degradation.

Calla M Olson, Baishan Jiang, Michael A Erb, Yanke Liang, Zainab M Doctor, Zinan Zhang, Tinghu Zhang, Nicholas Kwiatkowski, Myriam Boukhali, Jennifer L Green and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 268 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
268citing papers in PubMed, 1 pooled it
18.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

268 citing papers in PubMed, 1 synthesis or guideline pooled it, 540 citations in OpenAlex.

  1. Pooled it
  2. PROTACs in cancer therapy: targeted degradation of GPX4, PARP and epigenetic regulators.Journal of enzyme inhibition and medicinal chemistry · 2026
    Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Targeting CDKs in the RNAPII transcription cycle.Nature reviews. Drug discovery · 2026
    Review
  8. Article
  9. Review
  10. Tricarbonyl Rhenium-Based PROTACs Degrade the SARS-CoV-2 Mpro Protease.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Article
  11. CDK9 inhibition sensitizes intrinsically resistantActa pharmaceutica Sinica. B · 2026
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review

208 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 2 countries.

Calla M OlsonDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Baishan JiangDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Michael A ErbDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts, USA.ORCID 0000-0001-9993-3481
Yanke LiangDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Zainab M DoctorDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Zinan ZhangDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.ORCID 0000-0003-3831-2272
Tinghu ZhangDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Nicholas KwiatkowskiDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Myriam BoukhaliMassachusetts General Hospital Cancer Center and Department of Medicine, Harvard Medical School, Charlestown, Massachusetts, USA.
Jennifer L GreenActivX Biosciences, La Jolla, California, USA.
Wilhelm HaasMassachusetts General Hospital Cancer Center and Department of Medicine, Harvard Medical School, Charlestown, Massachusetts, USA.
Tyzoon NomanbhoyActivX Biosciences, La Jolla, California, USA.
Eric S FischerDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.ORCID 0000-0001-7337-6306
Richard A YoungWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.ORCID 0000-0001-8855-8647
James E BradnerDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts, USA.ORCID 0000-0002-2718-4415
Georg E WinterDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts, USA.
Nathanael S GrayDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.ORCID 0000-0001-5354-7403
Harvard University · USBoston Biomedical Research Institute · USWhitehead Institute for Biomedical Research · US

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Degrading therapeutically important kinases using small moleculesR01CA218278 · NCI · STANFORD UNIVERSITY · PI Eric Sebastian Fischer, NATHANAEL Schiander GRAY · 2019 to 2026
$4.6M
Development and Application of Selective Covalent Cdk7 InhibitorsR01CA179483 · NCI · DANA-FARBER CANCER INST · PI GRAY, NATHANAEL SCHIANDER, MITSIADES, CONSTANTINE S. · 2014 to 2016
$1.5M
NCI NIH HHS R01 CA179483NCI NIH HHS R01 CA218278NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

Cyclin-dependent kinase 9 (CDK9), an important regulator of transcriptional elongation, is a promising target for cancer therapy, particularly for cancers driven by transcriptional dysregulation. We characterized NVP-2, a selective ATP-competitive CDK9 inhibitor, and THAL-SNS-032, a selective CDK9 degrader consisting of a CDK-binding SNS-032 ligand linked to a thalidomide derivative that binds the E3 ubiquitin ligase Cereblon (CRBN). To our surprise, THAL-SNS-032 induced rapid degradation of CDK9 without affecting the levels of other SNS-032 targets. Moreover, the transcriptional changes elicited by THAL-SNS-032 were more like those caused by NVP-2 than those induced by SNS-032. Notably, compound washout did not significantly reduce levels of THAL-SNS-032-induced apoptosis, suggesting that CDK9 degradation had prolonged cytotoxic effects compared with CDK9 inhibition. Thus, our findings suggest that thalidomide conjugation represents a promising strategy for converting multi-targeted inhibitors into selective degraders and reveal that kinase degradation can induce distinct pharmacological effects compared with inhibition.

Indexed as

Adaptor Proteins, Signal TransducingApoptosisCell Line, TumorCell ProliferationCrystallography, X-RayCyclin-Dependent Kinase 9HumansInhibitory Concentration 50LigandsOxazolesPeptide HydrolasesPhosphorylationProtein BindingProtein ConformationProtein Kinase InhibitorsProteomicsAdaptor Proteins, Signal TransducingCDK9 protein, humanCRBN protein, humanCyclin-Dependent Kinase 9LigandsN-(5-(((5-(1,1-dimethylethyl)-2-oxazolyl)methyl)thio)-2-thiazolyl)-4-piperidinecarboxamideOxazolesPeptide HydrolasesProtein Kinase InhibitorsThalidomideThiazolesUbiquitin-Protein Ligases

Identifiers

PMID29251720
PMCPMC5912898
OpenAlexW2781383440

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.