Evidence map›Paper›PMID 29251491›Full record

ArticleBiochemistry2018

Glycosylation Promotes the Random Coil to Helix Transition in a Region of a Protist Skp1 Associated with F-Box Binding.

Xianzhong Xu, Alexander Eletsky, M Osman Sheikh, James H Prestegard, Christopher M West

Abstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Glycan structures and their interactions with proteins. A NMR view.Current opinion in structural biology · 2020
    Review
  9. Article
  10. Article
  11. Review
  12. Nucleocytoplasmic O-glycosylation in protists.Current opinion in structural biology · 2019
    Review
  13. Variation in FPOP Measurements Is Primarily Caused by Poor Peptide Signal Intensity.Journal of the American Society for Mass Spectrometry · 2018
    Article
  14. Regulation of SCFRedox biology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xianzhong XuDepartment of Biochemistry & Molecular Biology, ‡Complex Carbohydrate Research Center, and §Center for Tropical and Emerging Global Diseases, University of Georgia , Athens, Georgia 30602, United States.
Alexander EletskyDepartment of Biochemistry & Molecular Biology, ‡Complex Carbohydrate Research Center, and §Center for Tropical and Emerging Global Diseases, University of Georgia , Athens, Georgia 30602, United States.
M Osman SheikhDepartment of Biochemistry & Molecular Biology, ‡Complex Carbohydrate Research Center, and §Center for Tropical and Emerging Global Diseases, University of Georgia , Athens, Georgia 30602, United States.ORCID 0000-0002-9481-8318
James H PrestegardDepartment of Biochemistry & Molecular Biology, ‡Complex Carbohydrate Research Center, and §Center for Tropical and Emerging Global Diseases, University of Georgia , Athens, Georgia 30602, United States.
Christopher M WestDepartment of Biochemistry & Molecular Biology, ‡Complex Carbohydrate Research Center, and §Center for Tropical and Emerging Global Diseases, University of Georgia , Athens, Georgia 30602, United States.ORCID 0000-0001-9077-965X
University of Georgia · US

Funding

TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
Transfer of 5R01GM037539 - 22 CYTOSOLIC PROLINE HYDROXYLATION AND GLYCOSYLATIONR01GM037539 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI WEST, CHRISTOPHER M. · 1986 to 2016
$4.4M
NIGMS NIH HHS P41 GM103390NIGMS NIH HHS R01 GM037539
6 · The paper itself

Abstract

Cullin-ring-ligases mediate protein polyubiquitination, a signal for degradation in the 26S proteasome. The CRL1 class consists of Skp1/cullin-1/F-box protein/Rbx1 (SCF) complexes that cyclically associate with ubiquitin-E2 to build the polyubiquitin chain. Within the SCF complex, the 162-amino acid DdSkp1 from Dictyostelium bridges cullin-1 with an F-box protein (FBP), the specificity factor for substrate selection. The hydroxylation-dependent glycosylation of Pro143 of DdSkp1 by a pentasaccharide forms the basis of a novel O

Indexed as

F-Box MotifsAmino Acid SequenceDictyosteliumF-Box ProteinsGlycosylationHumansModels, MolecularProtein BindingProtein Conformation, alpha-HelicalProtein Interaction MapsProtozoan ProteinsSequence AlignmentSKP Cullin F-Box Protein LigasesS-Phase Kinase-Associated ProteinsF-Box ProteinsProtozoan ProteinsSKP Cullin F-Box Protein LigasesS-Phase Kinase-Associated Proteins

Identifiers

PMID29251491
PMCPMC6282176
OpenAlexW2776679281

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.