Evidence map›Paper›PMID 29249653›Full record

ArticleMolecular cell2018

Replication Stress Shapes a Protective Chromatin Environment across Fragile Genomic Regions.

Jeongkyu Kim, David Sturgill, Robin Sebastian, Simran Khurana, Andy D Tran, Garrett B Edwards, Alex Kruswick, Sandra Burkett, Eri K Hosogane, William W Hannon and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 95 citations in OpenAlex.

  1. Review
  2. Article
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  6. Visualizing DNA repair factor recruitment at sites of transcription in single cells.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Article
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  10. Review
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  19. Review
  20. Histone H2A variants: Diversifying chromatin to ensure genome integrity.Seminars in cell & developmental biology · 2023
    Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Jeongkyu KimLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
David SturgillLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Robin SebastianLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Simran KhuranaLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Andy D TranLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Garrett B EdwardsDepartment of Chemistry and Biochemistry, University of Colorado, Boulder, CO 80309, USA.
Alex KruswickLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Sandra BurkettMolecular Cytogenetics Core Facility, National Cancer Institute, NIH, Frederick, MD 21702, USA.
Eri K HosoganeLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
William W HannonLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Urbain WeyemiThe Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
William M BonnerDevelopmental Therapeutics Branch, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Karolin LugerDepartment of Chemistry and Biochemistry, University of Colorado, Boulder, CO 80309, USA.
Philipp OberdoerfferLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA. Electronic address: philipp.oberdoerffer@nih.gov.
National Cancer Institute · USUniversity of Colorado Boulder · USJohns Hopkins University · US

Funding

LRBGE Optical Microscopy CoreZICBC011574 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KARPOVA, TATIANA · 2014 to 2025
$7.4M
Investigating the role of DNA breaks in mammalian agingZIABC011283 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI OBERDOERFFER, PHILIPP · 2010 to 2019
$4.3M
RNAi screen for modifiers of homologous recombinationZIABC011282 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI OBERDOERFFER, PHILIPP · 2010 to 2017
$3.7M
Intramural NIH HHS ZIA BC011282
6 · The paper itself

Abstract

Recent integrative epigenome analyses highlight the importance of functionally distinct chromatin states for accurate cell function. How these states are established and maintained is a matter of intense investigation. Here, we present evidence for DNA damage as an unexpected means to shape a protective chromatin environment at regions of recurrent replication stress (RS). Upon aberrant fork stalling, DNA damage signaling and concomitant H2AX phosphorylation coordinate the FACT-dependent deposition of macroH2A1.2, a histone variant that promotes DNA repair by homologous recombination (HR). MacroH2A1.2, in turn, facilitates the accumulation of the tumor suppressor and HR effector BRCA1 at replication forks to protect from RS-induced DNA damage. Consequently, replicating primary cells steadily accrue macroH2A1.2 at fragile regions, whereas macroH2A1.2 loss in these cells triggers DNA damage signaling-dependent senescence, a hallmark of RS. Altogether, our findings demonstrate that recurrent DNA damage contributes to the chromatin landscape to ensure the epigenomic integrity of dividing cells.

Indexed as

BRCA1 ProteinCarcinogenesisCell DivisionCells, CulturedCellular SenescenceChromatinDNA DamageDNA RepairDNA ReplicationGenomic InstabilityHistonesHomologous RecombinationHumansSignal TransductionBRCA1 ProteinBRCA1 protein, humanChromatinHistonesmacroH2A histonechromatinDNA repairFACTmacroH2A1.2macro-histonereplication stresssenescence

Identifiers

PMID29249653
PMCPMC5756112
OpenAlexW2774673684

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.