Evidence map›Paper›PMID 29249157›Full record

ArticleJournal of the American Chemical Society2018

De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles.

Shao-Qing Zhang, Marco Chino, Lijun Liu, Youzhi Tang, Xiaozhen Hu, William F DeGrado, Angela Lombardi

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. A Designed ZnJournal of the American Chemical Society · 2025
    Article
  6. Article
  7. De novo metalloprotein design.Nature reviews. Chemistry · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Allosteric cooperation in a de novo-designed two-domain protein.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
  15. Article
  16. Quarterly reviews of biophysics · 2020
    Review
  17. A general-purpose protein design framework based on mining sequence-structure relationships in known protein structures.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Shao-Qing ZhangDepartment of Chemistry, University of Pennsylvania , 209 South 33rd Street, Philadelphia, Pennsylvania 19104-6396, United States.
Marco ChinoDepartment of Chemical Sciences, University of Napoli "Federico II" , Via Cintia, 46, 80126 Napoli, Italy.
Lijun LiuDepartment of Pharmaceutical Chemistry and the Cardiovascular Research Institute, University of California at San Francisco , San Francisco, California 94158-9001, United States.
Youzhi TangDepartment of Pharmaceutical Chemistry and the Cardiovascular Research Institute, University of California at San Francisco , San Francisco, California 94158-9001, United States.
Xiaozhen HuDepartment of Pharmaceutical Chemistry and the Cardiovascular Research Institute, University of California at San Francisco , San Francisco, California 94158-9001, United States.
William F DeGradoDepartment of Pharmaceutical Chemistry and the Cardiovascular Research Institute, University of California at San Francisco , San Francisco, California 94158-9001, United States.ORCID 0000-0003-4745-263X
Angela LombardiDepartment of Chemical Sciences, University of Napoli "Federico II" , Via Cintia, 46, 80126 Napoli, Italy.ORCID 0000-0002-2013-3009
University of California, San Francisco · USIstituto Nazionale di Fisica Nucleare, Sezione di Napoli · ITSouth China Agricultural University · CNUniversity of the Sciences · US

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
Deciphering the relationship between structure, dynamics and function in helical bundle proteinsR35GM122603 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WILLIAM DEGRADO · 2017 to 2026
$7.1M
Eliminating Critical Systematic Errors In Structural Biology With Next-Generation SimulationR01GM124149 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HOLTON, JAMES M · 2017 to 2024
$2.5M
High Performance Computer for Computational BiosciencesS10OD021596 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2016 to 2016
$443k
NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R01 GM124149NIGMS NIH HHS R35 GM122603NIH HHS S10 OD021596
6 · The paper itself

Abstract

De novo design provides an attractive approach to test the mechanism by which metalloproteins define the geometry and reactivity of their metal ion cofactors. While there has been considerable progress in designing proteins that bind transition metal ions including iron-sulfur clusters, the design of tetranuclear clusters with oxygen-rich environments has not been accomplished. Here, we describe the design of tetranuclear clusters, consisting of four Zn

Indexed as

Binding SitesCarrier ProteinsHydrogenModels, MolecularZincCarrier ProteinsHydrogenZinczinc-binding protein

Identifiers

PMID29249157
PMCPMC5860638
OpenAlexW2778365038

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.