Evidence map›Paper›PMID 29248492›Full record

ArticleThe Journal of allergy and clinical immunology2018

R-loops cause genomic instability in T helper lymphocytes from patients with Wiskott-Aldrich syndrome.

Koustav Sarkar, Seong-Su Han, Kuo-Kuang Wen, Hans D Ochs, Loïc Dupré, Michael M Seidman, Yatin M Vyas

Abstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Pooled it
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  9. Plasticity in leukocyte migration during haematopoiesis and inflammation.Journal of muscle research and cell motility · 2025
    Review
  10. Review
  11. Mechanisms underlining R-loop biology and implications for human disease.Frontiers in cell and developmental biology · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Koustav SarkarDivision of Pediatric Hematology-Oncology, Carver College of Medicine and the University of Iowa Stead Family Children's Hospital, Iowa City, Md.
Seong-Su HanDivision of Pediatric Hematology-Oncology, Carver College of Medicine and the University of Iowa Stead Family Children's Hospital, Iowa City, Md.
Kuo-Kuang WenDivision of Pediatric Hematology-Oncology, Carver College of Medicine and the University of Iowa Stead Family Children's Hospital, Iowa City, Md.
Hans D OchsCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, University of Washington, Seattle, Md.
Loïc DupréINSERM, UMR1043, Centre de Physiopathologie de Toulouse Purpan, Toulouse, Md; Université Toulouse III Paul-Sabatier, Toulouse, Md; CNRS, UMR5282, Toulouse, Md; Ludwig Boltzmann Institute for Rare and Undiagnosed Diseases, Vienna, Md; CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Md.
Michael M SeidmanLaboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health (NIH), NIH Biomedical Research Center, Baltimore, Md.
Yatin M VyasDivision of Pediatric Hematology-Oncology, Carver College of Medicine and the University of Iowa Stead Family Children's Hospital, Iowa City, Md. Electronic address: yatin-vyas@uiowa.edu.
University of Iowa · USCentre de Physiopathologie de Toulouse-Purpan · FRNational Institutes of Health · USUniversity of Washington · US

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Christopher K Laubenthal · 2000 to 2026
$70.0M
Repair of localized DNA damageZIAAG000746 · NIA · NATIONAL INSTITUTE ON AGING · PI SEIDMAN, MICHAEL · 2009 to 2025
$30.0M
Epigenetic Regulation by WASP of Human TBX21 Gene Transcription ProgramR01AI084957 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VYAS, YATIN M · 2011 to 2014
$1.5M
Factors that modulate cellular homeostasis to overcome replicative stress in agingZIAAG000577 · NIA · NATIONAL INSTITUTE ON AGING · PI SEIDMAN, MICHAEL · 2017 to 2021
$974k
Repair of localized DNA damageZ01AG000746 · NIA · NATIONAL INSTITUTE ON AGING · PI SEIDMAN, MICHAEL · 2007 to 2008
$607k
Intramural NIH HHS Z01 AG000746NIAID NIH HHS R01 AI084957
6 · The paper itself

Abstract

backgroundWiskott-Aldrich syndrome (WAS), X-linked thrombocytopenia (XLT), and X-linked neutropenia, which are caused by WAS mutations affecting Wiskott-Aldrich syndrome protein (WASp) expression or activity, manifest in immunodeficiency, autoimmunity, genomic instability, and lymphoid and other cancers. WASp supports filamentous actin formation in the cytoplasm and gene transcription in the nucleus. Although the genetic basis for XLT/WAS has been clarified, the relationships between mutant forms of WASp and the diverse features of these disorders remain ill-defined.

objectiveWe sought to define how dysfunctional gene transcription is causally linked to the degree of T

methodsIn human T

resultsWASp deficiency provokes increased R-loops and R-loop-mediated DSBs in T

conclusionTranscriptional R-loop imbalance is a novel molecular defect causative in T

Indexed as

Cells, CulturedDNA DamageGenomic InstabilityHumansTh1 CellsTranscription, GeneticWiskott-Aldrich SyndromeDNA damagegenomic instabilityPrimary immunodeficiencyR-loopsT(H)1/T(H)2 differentiationWiskott-Aldrich syndromeX-linked thrombocytopenia

Identifiers

PMID29248492
PMCPMC6003829
OpenAlexW2772629056

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.