Evidence map›Paper›PMID 29247589›Full record

ArticleCancer science2018

Whole exome sequencing to identify genetic markers for trastuzumab-induced cardiotoxicity.

Chihiro Udagawa, Hiromi Nakamura, Hiroshi Ohnishi, Kenji Tamura, Tatsunori Shimoi, Masayuki Yoshida, Teruhiko Yoshida, Yasushi Totoki, Tatsuhiro Shibata, Hitoshi Zembutsu

Open access · goldAbstract read
In one paragraph

Article in Cancer science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Genetic factors in the pathogenesis of cardio-oncology.Journal of translational medicine · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Chihiro UdagawaDivision of Genetics, National Cancer Center Research Institute, Tokyo, Japan.ORCID http://orcid.org/0000-0002-3430-2555
Hiromi NakamuraDivision of Cancer Genomics, National Cancer Center Research Institute, Tokyo, Japan.
Hiroshi OhnishiDivision of Genetics, National Cancer Center Research Institute, Tokyo, Japan.
Kenji TamuraDepartment of Breast and Medical Oncology, National Cancer Center Hospital, Tokyo, Japan.ORCID http://orcid.org/0000-0002-3514-9927
Tatsunori ShimoiDepartment of Breast and Medical Oncology, National Cancer Center Hospital, Tokyo, Japan.ORCID http://orcid.org/0000-0002-3603-8575
Masayuki YoshidaDepartment of Pathology and Clinical Laboratories, National Cancer Center Hospital, Tokyo, Japan.
Teruhiko YoshidaFundamental Innovative Oncology Core, National Cancer Center Research Institute, Tokyo, Japan.
Yasushi TotokiDivision of Cancer Genomics, National Cancer Center Research Institute, Tokyo, Japan.
Tatsuhiro ShibataDivision of Cancer Genomics, National Cancer Center Research Institute, Tokyo, Japan.
Hitoshi ZembutsuDivision of Genetics, National Cancer Center Research Institute, Tokyo, Japan.
National Cancer Centre Japan · JPTokyo National Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although trastuzumab-induced cardiotoxicity is an important determinant to limit the use of this drug, the molecular mechanism of risk for this toxicity is not well understood. To identify genetic variants determining the risk of trastuzumab-induced cardiotoxicity, we carried out whole exome sequencing of germline DNA samples from 9 patients with trastuzumab-induced cardiotoxicity, and conducted a case-control association study of 2258 genetic variants between 9 cases (with trastuzumab-induced cardiotoxicity) and general Japanese population controls registered in the Human Genetic Variation Database (HGVD). The top variant which showed the lowest P-value in the screening study was rs139503277 in PHD Finger Protein 3 (P

Indexed as

Polymorphism, Single NucleotideAdultAgedAged, 80 and overCardiotoxicityCase-Control StudiesExome SequencingEye ProteinsFemaleGenetic MarkersGerm-Line MutationHumansKeratin-15MaleMiddle AgedTranscription FactorsEye ProteinsEYS protein, humanGenetic MarkersKeratin-15KRT15 protein, humanPHF3 protein, humanTranscription FactorsTrastuzumabUbiquitin-Protein LigasesZNRF3 protein, humancardiotoxicityHER2pharmacogenomicstrastuzumabwhole exome sequencing

Identifiers

PMID29247589
PMCPMC5797809
OpenAlexW2772682222

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.