Evidence map›Paper›PMID 29247330›Full record

ArticleTransgenic research2018

Alteration of flower colour in Ipomoea nil through CRISPR/Cas9-mediated mutagenesis of carotenoid cleavage dioxygenase 4.

Kenta Watanabe, Chihiro Oda-Yamamizo, Kimiyo Sage-Ono, Akemi Ohmiya, Michiyuki Ono

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Article in Transgenic research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

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  15. Phylogeny ofInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kenta WatanabeGraduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan.
Chihiro Oda-YamamizoInstitute of Vegetable and Floriculture Science, National Agriculture and Food Research Organization, 2-1 Fujimoto, Tsukuba, Ibaraki, 305-0852, Japan.
Kimiyo Sage-OnoFaculty of Life and Environmental Sciences, Gene Research Center, Tsukuba Plant Innovation Research Center (T-PIRC), University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan.
Akemi OhmiyaInstitute of Vegetable and Floriculture Science, National Agriculture and Food Research Organization, 2-1 Fujimoto, Tsukuba, Ibaraki, 305-0852, Japan.
Michiyuki OnoGraduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan. ono.michiyuki.fm@u.tsukuba.ac.jp.ORCID 0000-0002-7262-8054

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Japanese morning glory, Ipomoea nil, exhibits a variety of flower colours, except yellow, reflecting the accumulation of only trace amounts of carotenoids in the petals. In a previous study, we attributed this effect to the low expression levels of carotenogenic genes in the petals, but there may be other contributing factors. In the present study, we investigated the possible involvement of carotenoid cleavage dioxygenase (CCD), which cleaves specific double bonds of the polyene chains of carotenoids, in the regulation of carotenoid accumulation in the petals of I. nil. Using bioinformatics analysis, seven InCCD genes were identified in the I. nil genome. Sequencing and expression analyses indicated potential involvement of InCCD4 in carotenoid degradation in the petals. Successful knockout of InCCD4 using the CRISPR/Cas9 system in the white-flowered cultivar I. nil cv. AK77 caused the white petals to turn pale yellow. The total amount of carotenoids in the petals of ccd4 plants was increased 20-fold relative to non-transgenic plants. This result indicates that in the petals of I. nil, not only low carotenogenic gene expression but also carotenoid degradation leads to extremely low levels of carotenoids.

Indexed as

CarotenoidsCRISPR-Cas SystemsDioxygenasesFlowersGene Expression Regulation, PlantGene Knockout TechniquesGenome, PlantIpomoea nilMutagenesisPhylogenyPigmentationPlant ProteinsPlants, Genetically ModifiedCarotenoidsDioxygenasesPlant ProteinsCarotenoid cleavage dioxygenaseCarotenoid metabolic engineeringCRISPR/Cas9Flower colour alterationIpomoea nilTargeted mutagenesis

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.