Evidence map›Paper›PMID 29247187›Full record

ArticleScientific reports2017

Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer.

Daniela Börnigen, Boyu Ren, Robert Pickard, Jingfeng Li, Enver Ozer, Erica M Hartmann, Weihong Xiao, Timothy Tickle, Jennifer Rider, Dirk Gevers and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed, 5 pooled it
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 5 syntheses or guidelines pooled it, 132 citations in OpenAlex.

  1. Pooled it
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  4. Association of Microbiome with Oral Squamous Cell Carcinoma: A Systematic Review of the Metagenomic Studies.International journal of environmental research and public health · 2021
    Pooled it
  5. The Human Microbiome in Relation to Cancer Risk: A Systematic Review of Epidemiologic Studies.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Pooled it
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21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Daniela BörnigenDepartment of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, 02115, USA.
Boyu RenDepartment of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, 02115, USA.
Robert PickardThe Ohio State University Comprehensive Cancer Center, Columbus, OH, 43202, USA.
Jingfeng LiThe Ohio State University Comprehensive Cancer Center, Columbus, OH, 43202, USA.
Enver OzerThe Ohio State University Comprehensive Cancer Center, Columbus, OH, 43202, USA.
Erica M HartmannBiology and the Built Environment Center and Institute of Ecology and Evolution, University of Oregon, Eugene, OR, 97403, USA.ORCID 0000-0002-0966-2014
Weihong XiaoThe Ohio State University Comprehensive Cancer Center, Columbus, OH, 43202, USA.
Timothy TickleThe Broad Institute of MIT and Harvard, Cambridge, MA, 02115, USA.
Jennifer RiderDepartment of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, 02115, USA.
Dirk GeversThe Broad Institute of MIT and Harvard, Cambridge, MA, 02115, USA.
Eric A FranzosaDepartment of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, 02115, USA.ORCID 0000-0002-8798-7068
Mary Ellen DaveyDepartment of Oral Biology, College of Dentistry, University of Florida, Gainesville, FL, 32610, USA.
Maura L GillisonThe Ohio State University Comprehensive Cancer Center, Columbus, OH, 43202, USA. maura.gillison@osumc.edu.
Curtis HuttenhowerDepartment of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, 02115, USA. chuttenh@hsph.harvard.edu.ORCID 0000-0002-1110-0096
Broad Institute · USThe Ohio State University · USHarvard University · USNorthwestern University · USUniversity of Florida · US

Funding

Regulatory Mechanisms Controlling Expression of P. gingivalis Surface StructuresR01DE019117 · NIDCR · UNIVERSITY OF FLORIDA · PI DAVEY, MARY ELLEN · 2009 to 2019
$4.5M
L-Arg Availability Affects the Physiological State of Porphyromonas gingivalisR01DE024580 · NIDCR · UNIVERSITY OF FLORIDA · PI DAVEY, MARY ELLEN · 2015 to 2024
$3.5M
NIDCR NIH HHS R01 DE019117NIDCR NIH HHS R01 DE024580
6 · The paper itself

Abstract

Oral squamous cell carcinomas are a major cause of morbidity and mortality, and tobacco usage, alcohol consumption, and poor oral hygiene are established risk factors. To date, no large-scale case-control studies have considered the effects of these risk factors on the composition of the oral microbiome, nor microbial community associations with oral cancer. We compared the composition, diversity, and function of the oral microbiomes of 121 oral cancer patients to 242 age- and gender-matched controls using a metagenomic multivariate analysis pipeline. Significant shifts in composition and function of the oral microbiome were observed with poor oral hygiene, tobacco smoking, and oral cancer. Specifically, we observed dramatically altered community composition and function after tooth loss, with smaller alterations in current tobacco smokers, increased production of antioxidants in individuals with periodontitis, and significantly decreased glutamate metabolism metal transport in oral cancer patients. Although the alterations in the oral microbiome of oral cancer patients were significant, they were of substantially lower effect size relative to microbiome shifts after tooth loss. Alterations following tooth loss, itself a major risk factor for oral cancer, are likely a result of severe ecological disruption due to habitat loss but may also contribute to the development of the disease.

Indexed as

AgedAlcohol DrinkingBacteriaCarcinoma, Squamous CellCase-Control StudiesFemaleHumansMaleMicrobiotaMiddle AgedMouth NeoplasmsOral HygieneOropharyngeal NeoplasmsRisk FactorsSmokingTobacco Use

Identifiers

PMID29247187
PMCPMC5732161
OpenAlexW2775715535

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.