Evidence map›Paper›PMID 29247163›Full record

ArticleScientific reports2017

Conserved molecular structure of the centromeric histone CENH3 in Secale and its phylogenetic relationships.

E V Evtushenko, E A Elisafenko, S S Gatzkaya, Y A Lipikhina, A Houben, A V Vershinin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

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  17. State-of-the-art and novel developments of in vivo haploid technologies.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

E V EvtushenkoInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk, 630090, Russia.
E A ElisafenkoInstitute of Cytology and Genetics SB RAS, Novosibirsk, 630090, Russia.
S S GatzkayaInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk, 630090, Russia.
Y A LipikhinaInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk, 630090, Russia.
A HoubenLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 06466, Stadt Seeland, Germany.ORCID 0000-0003-3419-239X
A V VershininInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk, 630090, Russia. avershin@mcb.nsc.ru.
Institute of Molecular and Cell Biology · RUInstitute of Cytology and Genetics · RULeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has been repeatedly demonstrated that the centromere-specific histone H3 (CENH3), a key component of the centromere, shows considerable variability between species within taxa. We determined the molecular structure and phylogenetic relationships of CENH3 in 11 Secale species and subspecies that possess distinct pollination systems and are adapted to a wide range of abiotic and biotic stresses. The rye (Secale cereale) genome encodes two paralogous CENH3 genes, which differ in intron-exon structure and are transcribed into two main forms of the protein, αCENH3 and βCENH3. These two forms differ in size and amino acid substitutions. In contrast to the reported differences in CENH3 structure between species within other taxa, the main forms of this protein in Secale species and subspecies have a nearly identical structure except some nonsynonymous substitutions. The CENH3 proteins are strictly controlled by genetic factors responsible for purifying selection. A comparison between Hordeum, Secale and Triticum species demonstrates that the structure of CENH3 in the subtribes Hordeinae and Triticinae evolved at different rates. The assumption that reticulate evolution served as a factor stabilizing the structure and evolutionary rate of CENH3 and that this factor was more powerful within Secale and Triticum than in Hordeum, is discussed.

Indexed as

Alternative SplicingAmino Acid SequenceCentromereChromosomes, PlantHistonesHordeumMolecular StructurePhylogenySecaleSequence AlignmentTriticumHistones

Identifiers

PMID29247163
PMCPMC5732303
OpenAlexW2774232036

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.