Evidence map›Paper›PMID 29244852›Full record

ArticlePloS one2017

Proteometabolomic response of Deinococcus radiodurans exposed to UVC and vacuum conditions: Initial studies prior to the Tanpopo space mission.

Emanuel Ott, Yuko Kawaguchi, Denise Kölbl, Palak Chaturvedi, Kazumichi Nakagawa, Akihiko Yamagishi, Wolfram Weckwerth, Tetyana Milojevic

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Thiol Reductases inAntioxidants (Basel, Switzerland) · 2022
    Review
  5. Article
  6. Proteomic Response ofLife (Basel, Switzerland) · 2021
    Article
  7. Response ofPeerJ · 2021
    Article
  8. Article
  9. Ionizing Radiation-induced Proteomic Oxidation inMolecular & cellular proteomics : MCP · 2020
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Proteomic and Metabolomic Profiling ofFrontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Emanuel OttDepartment of Biophysical Chemistry, University of Vienna, Vienna, Austria.
Yuko KawaguchiSchool of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.
Denise KölblDepartment of Biophysical Chemistry, University of Vienna, Vienna, Austria.
Palak ChaturvediDepartment of Biophysical Chemistry, University of Vienna, Vienna, Austria.
Kazumichi NakagawaGraduate School of Human Development and Environment, Kobe University, Kobe, Japan.
Akihiko YamagishiSchool of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.
Wolfram WeckwerthDepartment of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria.
Tetyana MilojevicDepartment of Biophysical Chemistry, University of Vienna, Vienna, Austria.ORCID http://orcid.org/0000-0001-8415-1890

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The multiple extremes resistant bacterium Deinococcus radiodurans is able to withstand harsh conditions of simulated outer space environment. The Tanpopo orbital mission performs a long-term space exposure of D. radiodurans aiming to investigate the possibility of interplanetary transfer of life. The revealing of molecular machinery responsible for survivability of D. radiodurans in the outer space environment can improve our understanding of underlying stress response mechanisms. In this paper, we have evaluated the molecular response of D. radiodurans after the exposure to space-related conditions of UVC irradiation and vacuum. Notably, scanning electron microscopy investigations showed that neither morphology nor cellular integrity of irradiated cells was affected, while integrated proteomic and metabolomic analysis revealed numerous molecular alterations in metabolic and stress response pathways. Several molecular key mechanisms of D. radiodurans, including the tricarboxylic acid cycle, the DNA damage response systems, ROS scavenging systems and transcriptional regulators responded in order to cope with the stressful situation caused by UVC irradiation under vacuum conditions. These results reveal the effectiveness of the integrative proteometabolomic approach as a tool in molecular analysis of microbial stress response caused by space-related factors.

Indexed as

Bacterial ProteinsCitric Acid CycleDeinococcusMicrobial ViabilityProteomeSpace FlightUltraviolet RaysVacuumBacterial ProteinsProteome

Identifiers

PMID29244852
PMCPMC5731708

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.