Evidence map›Paper›PMID 29244485›Full record

ArticleBiochemistry2018

Critical Role of Trp-588 of Presynaptic Munc13-1 for Ligand Binding and Membrane Translocation.

Joydip Das, Noemi Kedei, Jessica S Kelsey, Youngki You, Satyabrata Pany, Gary A Mitchell, Nancy E Lewin, Peter M Blumberg

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. SNARE Complex-Associated Proteins and Alcohol.Alcoholism, clinical and experimental research · 2020
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Joydip DasDepartment of Pharmacological & Pharmaceutical Sciences, College of Pharmacy, University of Houston , Houston, Texas 77204, United States.ORCID 0000-0003-1540-5804
Noemi KedeiCenter for Cancer Research, National Cancer Institute , Bethesda, Maryland 20892, United States.
Jessica S KelseyCenter for Cancer Research, National Cancer Institute , Bethesda, Maryland 20892, United States.
Youngki YouDepartment of Pharmacological & Pharmaceutical Sciences, College of Pharmacy, University of Houston , Houston, Texas 77204, United States.
Satyabrata PanyDepartment of Pharmacological & Pharmaceutical Sciences, College of Pharmacy, University of Houston , Houston, Texas 77204, United States.
Gary A MitchellCenter for Cancer Research, National Cancer Institute , Bethesda, Maryland 20892, United States.
Nancy E LewinCenter for Cancer Research, National Cancer Institute , Bethesda, Maryland 20892, United States.
Peter M BlumbergCenter for Cancer Research, National Cancer Institute , Bethesda, Maryland 20892, United States.
National Cancer Institute · USUniversity of Houston · US

Funding

Molecular Mechanism of Action of Phorbol EsterZIABC005270 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BLUMBERG, PETER · 2009 to 2018
$18.4M
MOLECULAR MECHANISM OF ACTION OF PHORBOL ESTER TUMOR PROMOTERSZ01BC005270 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BLUMBERG, PETER · 1996 to 2008
$4.3M
Role of Munc13-1 as a presynaptic effector of ethanol actionR01AA022414 · NIAAA · UNIVERSITY OF HOUSTON · PI DAS, JOYDIP · 2015 to 2019
$1.8M
Intramural NIH HHS Z01 BC005270NCI NIH HHS ZIA BC005270NIAAA NIH HHS R01 AA022414
6 · The paper itself

Abstract

Munc13-1 is a presynaptic active-zone protein essential for neurotransmitter release and presynaptic plasticity in the brain. This multidomain scaffold protein contains a C1 domain that binds to the activator diacylglycerol/phorbol ester. Although the C1 domain bears close structural homology with the C1 domains of protein kinase C (PKC), the tryptophan residue at position 22 (588 in the full-length Munc13-1) occludes the activator binding pocket, which is not the case for PKC. To elucidate the role of this tryptophan, we generated W22A, W22K, W22D, W22Y, and W22F substitutions in the full-length Munc13-1, expressed the GFP-tagged constructs in Neuro-2a cells, and measured their membrane translocation in response to phorbol ester treatment by imaging of the live cells using confocal microscopy. The extent of membrane translocation followed the order, wild-type > W22K > W22F > W22Y > W22A > W22D. The phorbol ester binding affinity of the wild-type Munc13-1C1 domain and its mutants was phosphatidylserine (PS)-dependent following the order, wild-type > W22K > W22A ≫ W22D in both 20% and 100% PS. Phorbol ester affinity was higher for Munc13-1 than the C1 domain. While Munc13-1 translocated to the plasma membrane, the C1 domain translocated to internal membranes in response to phorbol ester. Molecular dynamics (80 ns) studies reveal that Trp-22 is relatively less flexible than the homologous Trp-22 of PKCδ and PKCθ. Results are discussed in terms of the overall negative charge state of the Munc13-1C1 domain and its possible interaction with the PS-rich plasma membrane. This study shows that Trp-588 is an important structural element for ligand binding and membrane translocation in Munc13-1.

Indexed as

Amino Acid SubstitutionAnimalsCell Line, TumorCell MembraneLigandsMiceModels, MolecularMolecular Dynamics SimulationMutagenesis, Site-DirectedNerve Tissue ProteinsNeuroblastomaPhorbol 12,13-DibutyrateProtein BindingProtein ConformationProtein DomainsProtein TransportLigandsNerve Tissue ProteinsPhorbol 12,13-DibutyrateRecombinant ProteinsTryptophanUnc13a protein, rat

Identifiers

PMID29244485
PMCPMC6008642
OpenAlexW2772313509

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.