Evidence map›Paper›PMID 29244160›Full record

ArticleNucleic acids research2018

Interplay between the catabolite repression control protein Crc, Hfq and RNA in Hfq-dependent translational regulation in Pseudomonas aeruginosa.

Elisabeth Sonnleitner, Alexander Wulf, Sébastien Campagne, Xue-Yuan Pei, Michael T Wolfinger, Giada Forlani, Konstantin Prindl, Laetitia Abdou, Armin Resch, Frederic H-T Allain and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 1 pooled it
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 1 synthesis or guideline pooled it, 96 citations in OpenAlex.

  1. Pooled it
  2. Review
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  10. Combinatorial control ofmSystems · 2024
    Article
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  16. An acetyltranferase moonlights as a regulator of the RNA binding repertoire of the RNA chaperone Hfq inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Hfq-licensed RNA-RNA interactome inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

Elisabeth SonnleitnerDepartment of Microbiology, Immunobiology and Genetics, Max F. Perutz Laboratories, University of Vienna, Vienna Biocenter, Dr. Bohrgasse 9, 1030 Vienna, Austria.
Alexander WulfBiophysical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany.
Sébastien CampagneInstitute of Molecular Biology and Biophysics, ETH Zürich, 8093 Zürich, Switzerland.
Xue-Yuan PeiDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UK.
Michael T WolfingerInstitute of Theoretical Chemistry, University of Vienna, 1090 Vienna, Austria.
Giada ForlaniDepartment of Microbiology, Immunobiology and Genetics, Max F. Perutz Laboratories, University of Vienna, Vienna Biocenter, Dr. Bohrgasse 9, 1030 Vienna, Austria.
Konstantin PrindlDepartment of Microbiology, Immunobiology and Genetics, Max F. Perutz Laboratories, University of Vienna, Vienna Biocenter, Dr. Bohrgasse 9, 1030 Vienna, Austria.
Laetitia AbdouDepartment of Fundamental Microbiology, University of Lausanne, 1015 Lausanne, Switzerland.
Armin ReschDepartment of Microbiology, Immunobiology and Genetics, Max F. Perutz Laboratories, University of Vienna, Vienna Biocenter, Dr. Bohrgasse 9, 1030 Vienna, Austria.
Frederic H-T AllainInstitute of Molecular Biology and Biophysics, ETH Zürich, 8093 Zürich, Switzerland.
Ben F LuisiDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UK.
Henning UrlaubBiophysical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany.
Udo BläsiDepartment of Microbiology, Immunobiology and Genetics, Max F. Perutz Laboratories, University of Vienna, Vienna Biocenter, Dr. Bohrgasse 9, 1030 Vienna, Austria.
University of Vienna · ATETH Zurich · CHUniversity of Cambridge · GBMax Planck Institute for Biophysical Chemistry · DEUniversitätsmedizin Göttingen · DEUniversity of Lausanne · CH

Funding

Austrian Science Fund FWF P 28711Wellcome Trust 200873/Z/16/Z
6 · The paper itself

Abstract

In Pseudomonas aeruginosa the RNA chaperone Hfq and the catabolite repression control protein (Crc) act as post-transcriptional regulators during carbon catabolite repression (CCR). In this regard Crc is required for full-fledged Hfq-mediated translational repression of catabolic genes. RNAseq based transcriptome analyses revealed a significant overlap between the Crc and Hfq regulons, which in conjunction with genetic data supported a concerted action of both proteins. Biochemical and biophysical approaches further suggest that Crc and Hfq form an assembly in the presence of RNAs containing A-rich motifs, and that Crc interacts with both, Hfq and RNA. Through these interactions, Crc enhances the stability of Hfq/Crc/RNA complexes, which can explain its facilitating role in Hfq-mediated translational repression. Hence, these studies revealed for the first time insights into how an interacting protein can modulate Hfq function. Moreover, Crc is shown to interfere with binding of a regulatory RNA to Hfq, which bears implications for riboregulation. These results are discussed in terms of a working model, wherein Crc prioritizes the function of Hfq toward utilization of favored carbon sources.

Indexed as

Catabolite RepressionProtein BiosynthesisBacterial ProteinsBinding SitesBordetella pertussisCarbohydrate MetabolismEscherichia coliGene Expression Regulation, BacterialHost Factor 1 ProteinKineticsModels, MolecularNucleotide MotifsProtein BindingProtein Interaction Domains and MotifsProtein Structure, SecondaryPseudomonas aeruginosaBacterial Proteinscrc protein, PseudomonasHost Factor 1 ProteinRepressor ProteinsRNA, Bacterial

Identifiers

PMID29244160
PMCPMC5815094
OpenAlexW2772320191

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.